PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000161022
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 684aa    MW: 77605.8 Da    PI: 8.1343
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000161022genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-17150233389
                    EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    kv +++++   + l+lp  fa++h ++++ +    +l+ ++g +W vkl++   +g++ +++GW eFv++n+Lk+gD++vF l++  e
  MDP0000161022 150 KVAMQPSYIFGN-LILPAGFAKRHlMHQPXG--NAILRLPDGGTWCVKLKIYE-KGKVRFQRGWLEFVRDNNLKTGDVCVFILIKGIE 233
                    555666666665.9**********8666666..699999**********5433.33588**********************9987544 PP
2B3567.4e-184905751099
                    HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    +  s+ l lp +f+++h  +k++s  ++l+ ++g +W v+++y+ ++    +++GW+ F+++n+Lk+gD +vF+l++++e ++ v +fr+
  MDP0000161022 490 YIHSSYLGLPYEFVRTHL-NKQRSSNVILQILDGSTWPVTFKYDXTP---RFQNGWSVFARENNLKVGDLCVFELVNHDELTFEVVFFRA 575
                    4556679**********4.4557779***************777777...58************************99999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508636.428164IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-52971IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-63075IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-22141238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-23142238IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-23147242No hitNo description
PfamPF023623.0E-15149238IPR003340B3 DNA binding domain
SMARTSM010191.7E-17149244IPR003340B3 DNA binding domain
PROSITE profilePS5086312.59162244IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-20474575IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-20475575IPR015300DNA-binding pseudobarrel domain
CDDcd100176.57E-20480574No hitNo description
PROSITE profilePS5086313.902481576IPR003340B3 DNA binding domain
SMARTSM010192.6E-17482576IPR003340B3 DNA binding domain
PfamPF023627.8E-16488575IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MASLRPTFSS TIPHFFKVIL DDTSRDTKLG WPEFSKFYSL DYAFWLVFGY EGNSRFHVFI  60
FDRSCTEVDY PIKLPEKEKT DYEDDESVEI LDDFPTSRRR KXERYSSLPC PLPPKKKGKS  120
YXRMHPLTEK DKAIALQRAI AFKSEKPHFK VAMQPSYIFG NLILPAGFAK RHLMHQPXGN  180
AILRLPDGGT WCVKLKIYEK GKVRFQRGWL EFVRDNNLKT GDVCVFILIK GIELAFEVXF  240
YRGTEAXNCS LSPGGHAKGA RAMDQGKWEI GTSSSHDPYA GKECSGGLNL ETXYEDHDDK  300
SVEILDDLCP RKSRDKSLVM PKLEETDKHD DXSNDDISRD SDEVQDDPTI PEEEETDYED  360
DXSVEILDDX SPCPRKTREK SPLPCLHKKM RTCSSSKAAE CNTNFPATKT QPXEIKKSFR  420
SXXSYCSKSE VKSKEXVGGL SSSQIFXKRT XDVLGREHSL TKSEXALALQ RANAFKSEYP  480
SFXVAIXPXY IHSSYLGLPY EFVRTHLNKQ RSSNVILQIL DGSTWPVTFK YDXTPRFQNG  540
WSVFARENNL KVGDLCVFEL VNHDELTFEV VFFRATEAKM CSSSAGHGGG AIDQVEIKRR  600
SICKVKSGEY TKLKISDQVT QTPSCLKASR VLEAANNFIP KNPFFRATLG PTSKTVHVPV  660
KVAMRFPLRK AQTTTLQVGE HSGX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1412324523144B3 domain-containing transcription factor VRN1
4i1k_B1e-1412324523144B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119PKKKGKS
2373379PRKTREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505416.10.0PREDICTED: uncharacterized protein LOC108867956
TrEMBLA0A498KHT00.0A0A498KHT0_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1657124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-17related to vernalization1 1