PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000162363
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 185aa    MW: 21721.7 Da    PI: 8.7822
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000162363genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B384.41e-26797182
                   EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
             B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82
                   f+k+ltpsdv+k++rlv+p + a+++         ++++ +s +l+++d+  rsW+++++y+k+s+++v+t+GW++Fvk ++Lk++D+++F
  MDP0000162363  7 FQKELTPSDVSKLNRLVIPVTNAKRCfpsisesisQKVESGSSQLVFYDKMMRSWTFRYCYWKSSRSFVFTRGWSRFVKTHHLKAKDILTF 97
                   99******************************99988889999***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-304101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-265101IPR015300DNA-binding pseudobarrel domain
CDDcd100176.29E-24697No hitNo description
SMARTSM010199.5E-207108IPR003340B3 DNA binding domain
PfamPF023626.8E-24797IPR003340B3 DNA binding domain
PROSITE profilePS5086311.6037122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MLNRLLFQKE LTPSDVSKLN RLVIPVTNAK RCFPSISESI SQKVESGSSQ LVFYDKMMRS  60
WTFRYCYWKS SRSFVFTRGW SRFVKTHHLK AKDILTFFQC HYKQLGDNGN KEPQTFYMVK  120
VNWDGAESED DNINCLVEND ANNYQYDKCK LESVSQNINE AEGIRADQKK RFRLFGVEIC  180
NEVAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-2461097101B3 domain-containing transcription factor NGA1
5os9_B1e-2461097101B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951083.11e-134AP2/ERF and B3 domain-containing transcription factor At1g50680-like
TrEMBLA0A498HW871e-133A0A498HW87_MALDO; Uncharacterized protein
STRINGXP_008350338.11e-138(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1709048
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.13e-36RAV family protein