PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000163159
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WOX
Protein Properties Length: 248aa    MW: 28534.4 Da    PI: 8.5649
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000163159genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-181170357
                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   +R+++ ++ql  Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  MDP0000163159 11 SRWCPAPKQLMLLEEMYRAgIRTPNASQIQHITAQLsfygKIEGKNVFYWFQNHKARDRQ 70
                   8*****************99*************************************996 PP
2Wus_type_Homeobox114.36.2e-37971264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +++RW+P p+Q+++Lee+y++G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk
      MDP0000163159  9 SSSRWCPAPKQLMLLEEMYRAGIRTPNASQIQHITAQLSFYGKIEGKNVFYWFQNHKARDRQK 71
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.977671IPR001356Homeobox domain
SMARTSM003896.0E-4875IPR001356Homeobox domain
SuperFamilySSF466897.45E-101170IPR009057Homeodomain-like
PfamPF000463.4E-161170IPR001356Homeobox domain
CDDcd000860.003311271No hitNo description
Gene3DG3DSA:1.10.10.601.3E-61270IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSPAANSSSS SRWCPAPKQL MLLEEMYRAG IRTPNASQIQ HITAQLSFYG KIEGKNVFYW  60
FQNHKARDRQ KLRRKLCKQL QQQQLLYHHH NYHNYRNCHY EQQLNQQTFL GYLETPPPVP  120
SALHHKQLYT CHHHNNYSST GFLPPQVGVE DAMINYTWKM EIPEKVEMEK PVMSMYGREW  180
MMMMMMDVSP PSPCCTSSSS STTTTTTTTT STPPLKTLQL FPITATDLKE ESTASHSALS  240
SSTLTDNH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358043.21e-146WUSCHEL-related homeobox 3-like
TrEMBLA0A498KAV81e-144A0A498KAV8_MALDO; Uncharacterized protein
STRINGXP_008358043.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-32WOX family protein