PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000163338
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 222aa    MW: 25366 Da    PI: 8.4728
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000163338genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind87.12.3e-27141442102
                    HHHHHHHHHCTG......GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT................. CS
   HSF_DNA-bind   2 Flkklyeilede......elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks................. 74 
                    Fl+k++++le++        ++++sw+ +g+ f+v+ +++f++ +LpkyFkh+nf+SF+RQLn+Y    + +  ++  +                 
  MDP0000163338  14 FLSKTFDLLEENdggdggGKRNIVSWNVEGTGFIVWSPDDFSELLLPKYFKHNNFSSFIRQLNTYYLPGLFNYFSQAPTlvrglailtcdpnpqtl 109
                    9*********8777777799*********************************************98877777766555778899**999999988 PP

                    .......XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
   HSF_DNA-bind  75 .......kekiweFkhksFkkgkkellekikrkks 102
                           ++k w+Fkh++F+kg +e+l +i rkk 
  MDP0000163338 110 kqgfkktSRKEWQFKHEKFQKGCREMLVEITRKKC 144
                    877765449***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.2E-30478IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-2810142IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.94E-2010142IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-2414142IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-65870IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-67183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.2E-30112137IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAEKSSRTRS TAPFLSKTFD LLEENDGGDG GGKRNIVSWN VEGTGFIVWS PDDFSELLLP  60
KYFKHNNFSS FIRQLNTYYL PGLFNYFSQA PTLVRGLAIL TCDPNPQTLK QGFKKTSRKE  120
WQFKHEKFQK GCREMLVEIT RKKCEPSAFP VYLKASEESG STSTAVVAAE ENNCLLLMEE  180
NKNLRKQKLE LQVQIAQFKT LESKLLDCVA QCMDDHQNKV RC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9865251e-38FJ986525.1 Corylus avellana clone B728 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008383745.11e-125heat stress transcription factor B-2a-like
TrEMBLA0A498IXH71e-113A0A498IXH7_MALDO; Uncharacterized protein
STRINGXP_008383744.11e-125(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.16e-28heat shock transcription factor B2A