PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000164531
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YA
Protein Properties Length: 315aa    MW: 34246.7 Da    PI: 9.0571
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000164531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA58.91.6e-18142198158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k+rk      R+    + +Rg+gGrF
  MDP0000164531 142 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKARKSRKLXIRKISIEHWARGCGGRF 198
                    69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.9E-19140201IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115225.546141201IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.6E-13143198IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.5E-11144166IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860146166IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.5E-11175198IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
ICSQPWWRGV GNGSASSLVD HSNSMVMNGA MQAQPNARLD GGXANFHKEL RTTVGSQSDG  60
NNGSENEHIK SVSSSVVPAL GEHVDPNSQM ELVGHSIVMS SYPYSDPQYG GMLTPYGPQA  120
MLPPHFYGMH PGRMPLPLDM EEEPVYVNAK QYHGILRRRQ SRAKAELEKK LIKARKSRKL  180
XIRKISIEHW ARGCGGRFLN TKKQDANDEN SSLEKGMNLD GNHSAQSASN VQQDGSGPWF  240
RTHDHHTHSN GNGNDHGPSS AYPSTFGDSR ENMQLKGLSR GAIPSEAQGV HGVSWGKPGC  300
AMSLSGKSFL ALVTL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.164120.0fruit| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028960856.10.0nuclear transcription factor Y subunit A-4-like
TrEMBLA0A498JKA60.0A0A498JKA6_MALDO; Uncharacterized protein
STRINGXP_008346932.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.17e-25nuclear factor Y, subunit A7