PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000165516
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YC
Protein Properties Length: 241aa    MW: 27782.1 Da    PI: 10.5615
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000165516genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC82.54.9e-2611751778
          NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskace...lfileltlrswlhaeenkrrtlkksd 78
                   ++h+lPlarikki+kadedv++i +eaPvl++kace   +fi +lt+ swlhaee+kr++++k+ 
  MDP0000165516 11 HHHQLPLARIKKIMKADEDVRVIFSEAPVLFAKACEacdFFIPKLTICSWLHAEESKRQAFQKTT 75
                   589******************************9874447**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.7E-22875IPR009072Histone-fold
SuperFamilySSF471131.12E-12969IPR009072Histone-fold
PfamPF008083.2E-101470IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MFPHFPHHRN HHHQLPLARI KKIMKADEDV RVIFSEAPVL FAKACEACDF FIPKLTICSW  60
LHAEESKRQA FQKTTLPPPL PAPTYSISWW IMYPATRSRR RQWVSEICSR RRFQRAELKI  120
CRKANDLFLE LDQTVQNPSK SQMLVLSQIA DSSQYCLLHS PKDAVSRPRR NESVGVKLRR  180
RRSSAGEPMG PPTKEEVVGL CTKKKRSLRR KGNVCQDESK LAAHETALNV PISQLSNDNF  240
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-1912801580NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498J7C73e-54A0A498J7C7_MALDO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.15e-23nuclear factor Y, subunit C1