PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000166245

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 449aa MW: 49929.6 Da PI: 6.7968

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000166245	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.6	4.6e-08	351	393	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ r+RR+ri +++ L++l+P K++ a++L +A +Y+k L MDP0000166245 351 AAARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 393 567*****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.339	344	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-13	350	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-14	350	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-5	352	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-12	353	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.39E-4	366	398	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MDGLDWDGSH ITNTSTLLWS NHQVHDLEES LLLSNSSSSA FIPIQELPKV QTSHVIMNSN 60 AERPSNIGTH QIAHQKNRCG LDSVHDMPTL RADELCQSPL NISRPYNLMS SLSTSTFMAA 120 DHYGIIGKHV QPQANFHGLQ DQHVKAKPAT TCSIESLDCL LSGTNSNTDT SVEDDDGISM 180 LFSDCRRNLW NFGAGNNSAI SSGDSENNET VVSQSSSDLY VQIQGKPNST KRSHDQSEPK 240 LHETNYSHFG LLQTDYSSTS EGGFRLISET PPKPKKLRSD NKRPSSSNIS FRQPSSSVPT 300 LSIEEPDPEA IAQMKEMIYR AAAFRPVNLG LEMVERPKRK NVKISSDPQT AAARQRRERI 360 SERIRVLQRL VPGGSKMDTA SMLDEAANYL KFLRSQVKAL ENLGQKIESM SNFNIPPTSF 420 AFSFNPSFPM QTHNHNPLQN PYHIDQPHS

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MDGLDWDGSH ITNTSTLLWS NHQVHDLEES LLLSNSSSSA FIPIQELPKV QTSHVIMNSN  60
AERPSNIGTH QIAHQKNRCG LDSVHDMPTL RADELCQSPL NISRPYNLMS SLSTSTFMAA  120
DHYGIIGKHV QPQANFHGLQ DQHVKAKPAT TCSIESLDCL LSGTNSNTDT SVEDDDGISM  180
LFSDCRRNLW NFGAGNNSAI SSGDSENNET VVSQSSSDLY VQIQGKPNST KRSHDQSEPK  240
LHETNYSHFG LLQTDYSSTS EGGFRLISET PPKPKKLRSD NKRPSSSNIS FRQPSSSVPT  300
LSIEEPDPEA IAQMKEMIYR AAAFRPVNLG LEMVERPKRK NVKISSDPQT AAARQRRERI  360
SERIRVLQRL VPGGSKMDTA SMLDEAANYL KFLRSQVKAL ENLGQKIESM SNFNIPPTSF  420
AFSFNPSFPM QTHNHNPLQN PYHIDQPHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	353	358	RQRRER

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028963360.1	0.0	LOW QUALITY PROTEIN: transcription factor bHLH87
Swissprot	Q8S3D2	9e-89	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A498J0B2	0.0	A0A498J0B2_MALDO; Uncharacterized protein
STRING	XP_008380831.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	9e-79	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000166245

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]