PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000166392

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 392aa MW: 44459.6 Da PI: 10.1852

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000166392	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	5.7e-17	192	239	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT Ed +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l MDP0000166392 192 KGXWTSAEDAILVEYVKKHGEGNWNAVXKHSGLFRCGKSCRLRWANHL 239 799*****************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.302	187	243	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.9E-22	190	248	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-14	191	241	IPR001005	SANT/Myb domain
Pfam	PF00249	8.3E-15	192	239	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.97E-18	193	254	IPR009057	Homeodomain-like
CDD	cd00167	2.86E-10	195	239	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MRNFYLWVCR LQDWRQGRDE SKPQKQSLAG SRRSRCRSSR DSLAGRQAEA DASRQSGDQV 60 AKADAEMQGG GAEAVTETTC MHSRKATLFR VEILSGFLFS KFKNLDIQGY KMIERSPPKF 120 AFCPNYMRVV VVVVSLLFAW SWLLVGVLIT NQEMSRTTNE SEDGVLSKDQ IDSPLMDESN 180 GGSGNGGMVL KKGXWTSAED AILVEYVKKH GEGNWNAVXK HSGLFRCGKS CRLRWANHLR 240 PNLKKGAXTX EEERSEGRGR VREARDDPDQ SSTDNQKFQM VLTITRDGLK IDCKRYQKMD 300 KNWAGLAQLI IVGQQDDRAE PAKESSTLSV FVNSEPMREE QVQNVVKFLS HPKVRGSLLL 360 FTNGLFSRRR VSQQKRLTKR FGVCLTQLVF WI

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MRNFYLWVCR LQDWRQGRDE SKPQKQSLAG SRRSRCRSSR DSLAGRQAEA DASRQSGDQV  60
AKADAEMQGG GAEAVTETTC MHSRKATLFR VEILSGFLFS KFKNLDIQGY KMIERSPPKF  120
AFCPNYMRVV VVVVSLLFAW SWLLVGVLIT NQEMSRTTNE SEDGVLSKDQ IDSPLMDESN  180
GGSGNGGMVL KKGXWTSAED AILVEYVKKH GEGNWNAVXK HSGLFRCGKS CRLRWANHLR  240
PNLKKGAXTX EEERSEGRGR VREARDDPDQ SSTDNQKFQM VLTITRDGLK IDCKRYQKMD  300
KNWAGLAQLI IVGQQDDRAE PAKESSTLSV FVNSEPMREE QVQNVVKFLS HPKVRGSLLL  360
FTNGLFSRRR VSQQKRLTKR FGVCLTQLVF WI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-11	190	254	5	68	B-MYB

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.16407	1e-161	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11440.1	2e-32	myb domain protein 65

Link Out ? help Back to Top
Phytozome	MDP0000166392