PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000166580
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 934aa    MW: 105150 Da    PI: 8.0781
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000166580genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.2e-147958791495
                    T-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
             B3  14 grlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                      + l kk ae+h  +++ + ++ + +ed  ++r+W+++++y  ++ks++y+l+ ++ +Fv+angL+egDf+v++  ++ ++ +++++
  MDP0000166580 795 LKFLLQKKEAETHlpELDARDGISIAMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCNKYMIR 879
                    458899*********999999********7778*********777777777777.********************..55588877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010198.9E-10794884IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-19796890IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-10796878IPR003340B3 DNA binding domain
SuperFamilySSF1019361.8E-15797878IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 934 aa     Download sequence    Send to blast
MAWVNDDEGE QMIRLRHRTV APFRWERKAG VTISGVKAEK VEARDQNPGK KPIQRYLRKT  60
KQKTRTKNKN XQKSWRCKYI ETPQNIPEHT WGLLRAFPVP PPFNHAPFLS THLKKIDHFS  120
PPLFYSLSTA APSGSSRACE ELGFIEVAFL LICTELVFGS KVSREMKGEQ VQVQVPVHHQ  180
HQDLHAGDLD TLGVDPRKMW LDDDQETTLD VNDPSIFYND KFPPLPDFPC MSSSSSSSST  240
PAPVKTVTCS SSSPSVSSSS SAASWAVLKS DAEPEDGERK QQQHNSYHHQ YSQIDDQTVD  300
AHALSSTVSM EISQPLDLSG GIDCMDEMGT FGYMDLFESN ECFDPSSIFQ SDSLFMEQFQ  360
QDQDNQHLAM AHQLQDHHEI ATTIQSNPQQ QKQVVGQDEE NTNKDQSNDK KDPDDMAMVF  420
LEWLRSNRET VSAEDLRSVK IKKSTIECAA RRLGGGKEAM KQLLKLVLEW VQTNHLQKRR  480
SNSITTKDSN LIAQQQYQDP YQNPNPNSIP RVLESNPSCN FTQRPCMAPP PHAAAYDPAX  540
GGLLVPIPPP ASPPPAAYPS MMGYMTADPF GNGPSSYQPS PEYHHHMIDS GQPSWQSSPF  600
GMVGTAPYGS FPDNNIHLAP PQHHPQAFAG YSSQYQPYQY FPGNGERQLM RLGPSATKEA  660
RKKRMARQRR LVSHHRHHGH QQNSQQLNNE MPDHNYLQQT RFVGNTTDLN CTGAVPLQPN  720
PGNWFYWPTA TAALSSSAVA MMPSIMPEAA PLPPVQQMDR PASNQAQNYN QGRSAAQERQ  780
ERQERRQGWK SEKNLKFLLQ KKEAETHLPE LDARDGISIA MEDIGTSRVW NMRYRYWPNN  840
KSRMYLLENT GDFVRANGLQ EGDFIVIYSD VKCNKYMIRG VKVRQEGPKS EGNKRPGKTQ  900
RNQHASTPAV NNGSSPSSAT TAHKKITVKS KARK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A9e-3079688619109B3 domain-containing transcription factor FUS3
6j9b_D9e-3079688619109B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028965763.10.0LOW QUALITY PROTEIN: B3 domain-containing transcription factor ABI3-like
TrEMBLA0A498J0V60.0A0A498J0V6_MALDO; Uncharacterized protein
STRINGXP_008382790.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94483037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.17e-69B3 family protein