PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000166683
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 143aa    MW: 16134.1 Da    PI: 8.1439
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000166683genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-062446123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++Cg+ F ++  L  H+++H
  MDP0000166683 24 FECHYCGRKFESSQALGGHQNKH 46
                   89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.58E-72052No hitNo description
Gene3DG3DSA:3.30.160.602.3E-42150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.1962451IPR007087Zinc finger, C2H2
PfamPF139121.7E-62448IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MKLFGFSVTD DSDQVAVIIE SKKFECHYCG RKFESSQALG GHQNKHKRER QLERMAMLEH  60
IQHLRHPPPN HNHRDQNQLV AASVPIFVCS TGSTSNINGD HAGAARVPSV VAPRNLHGPY  120
FNQIEQVVPN TDEGNYVDLR LRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008353214.21e-105zinc finger protein 8-like
TrEMBLA0A498HLW83e-77A0A498HLW8_MALDO; Uncharacterized protein
STRINGXP_008390585.11e-104(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.15e-15C2H2 family protein