PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000168957
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 364aa    MW: 39802.3 Da    PI: 7.4856
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000168957genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000275981123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C + F++   L  H+++H
  MDP0000168957 59 YSCSFCRREFRSAQALGGHMNVH 81
                   99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.96E-65686No hitNo description
PROSITE profilePS5015711.2195986IPR007087Zinc finger, C2H2
SMARTSM003550.00985981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEQARYWMWA KRKHNGLSSS NHDHHLQVPI SNDDSWEEQA FAEDAAGPLG GCIWPPRSYS  60
CSFCRREFRS AQALGGHMNV HRRDRAILKQ SPNDETARHN HLHHHQDHDH SLQNSANNPF  120
SSSLGSFQFS SHQVCAQVYN PKSPIATSSP SSVSRVSAQL PCKKNCAEQT LIPPSSSASS  180
PQSWSVMGIN RYYKKRSAER DHIKGDKISR KVESSSCREK GDHHVANSDL NLSVSLNLVV  240
RCEHTSASDD GDEAIVSSKR RKTDDVPSSI PFFLKSGSVD KVHHVQSAEG FEISSSSIED  300
LDLELRLGDR PKGVTTTIWS GNDCSGDGGG ASGNGDVVVV AVVVVLLVMV ATMVVVMVVV  360
VKGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125481229superman protein
2l1o_A1e-125481229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.304670.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4184750.0HQ418475.1 Malus x domestica transcriptional regulator superman (SUP4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288052.10.0uncharacterized protein LOC103433449
RefseqXP_008369935.10.0uncharacterized protein LOC103433449 isoform X1
TrEMBLF6KKG20.0F6KKG2_MALDO; Transcriptional regulator superman
STRINGXP_008369935.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.16e-25C2H2 family protein