PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000170251
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 751aa    MW: 85702.6 Da    PI: 6.8089
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000170251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.42.3e-18113199290
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     Yn+YA++ GFsvrk ++++++ n+      + Cskeg++ + + + e +++ + etr  Cka ++   ++ g+ +v+++  +HnHela
  MDP0000170251 113 LYNNYATTFGFSVRKGQKRYNRXNQ-LRXVCYLCSKEGFKVDGDPS-EASNSYKLETRXXCKAXIRFAVQTXGTLKVAQFFXQHNHELA 199
                    7*******************97777.9***************9998.99999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-15113199IPR004330FAR1 DNA binding domain
PfamPF105511.4E-21321401IPR018289MULE transposase domain
PROSITE profilePS509669.977465501IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-5474499IPR007527Zinc finger, SWIM-type
SMARTSM005756.2E-4476503IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MCPEYGAVCY MLLYEKLLDG TVLPHGTDSC LFKFWDHSQK VGSAPFTKKQ SFTKEEYGYC  60
DEENNQKEDP IIDIESDEEN NREXDPVXVN RXENFDDIFV GKVVLNEKEA YDLYNNYATT  120
FGFSVRKGQK RYNRXNQLRX VCYLCSKEGF KVDGDPSEAS NSYKLETRXX CKAXIRFAVQ  180
TXGTLKVAQF FXQHNHELAK PXXRQFXRSN RKVSEAQLGV IKTMAXAGIR TTNTYSYLXE  240
EAGGSQNVGF TQRDCYNVVN KEKMVMFEAG DAQSLINLFK HKQAXDHMFF YXXQVDQENR  300
MTNFFWXDGR SRLDYECFGD VVVFDTTYRT NRYNMICAXF VGVNHHWKNV LFGCAFLLDX  360
KTETFTWLFD TFXESXGGQK PKTIFXXQCQ AMANGIEKVF SXGLPSXVAQ XSGXLKHXXT  420
VYTRKMFKIF EKEFLNSLAV TMXEYESCGT IHSFELNXEG HXRVYLXQLN SSDGTXSCSC  480
KMYEXXGLLC XHALRVLNVK SWTEIPSQHI LKRWTKDAKK GLHANEHSQL LQVKGEPSVT  540
LRRNALMRMA YNILSKGAES XXATRVAMKK LGEMEELIEK DMIKSKGEVN KESNDNNDDD  600
CNXNGCXXDE PPILNPPLVR PKXGKPRKPS NIGPSHSSTP YDSNFLQQLS VPTSTNVTQV  660
YPTMSLLTTN SHALPPSNQV FPAVSLLTTN NHALPPYNQV IQPSFSFTTM LQDSQFMASQ  720
NSSSSFIAHE PFGLNPQLSQ VEDDMFWVGN L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028952400.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM5WL031e-135M5WL03_PRUPE; Uncharacterized protein (Fragment)
TrEMBLM5X4771e-135M5X477_PRUPE; Uncharacterized protein
STRINGXP_008353320.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-47FAR1-related sequence 5