PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000172887
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 148aa    MW: 15798.7 Da    PI: 9.215
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000172887genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-121640226
                   -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                   +  +C f++++G+Ck+G++CkF H+
  MDP0000172887 16 GVQPCTFYLQNGQCKFGSTCKFDHP 40
                   5689********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-51441IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1871442IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-101640IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-71745IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-61841IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSYSMEKINV LLFGQGVQPC TFYLQNGQCK FGSTCKFDHP VQTMRYDLSA SSLVDMPVVQ  60
YPVGSLLATL APSSSSSDLR PEFLSASKRD TYSTRVPSSG NTSSSSGGLI FSQSGSVSLS  120
DVQLSSQTSS PLSNSRSTRP GGAFRRSI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.122110.0fruit
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389189.11e-83zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_017192654.11e-84zinc finger CCCH domain-containing protein 32-like isoform X3
RefseqXP_028956222.12e-84zinc finger CCCH domain-containing protein 32-like isoform X2
SwissprotQ84W915e-31C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A498ISN92e-63A0A498ISN9_MALDO; Uncharacterized protein
STRINGXP_008389189.14e-83(Malus domestica)
STRINGXP_008389190.12e-84(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.21e-19C3H family protein