PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000173477
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 276aa    MW: 31020.4 Da    PI: 7.7171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000173477genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.3e-08160191435
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TT CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskaps 35 
                     hn+ Er RR++i+ ++  L+el+P++ kap+
  MDP0000173477 160 LHNMSERMRRNKIRGKLKVLQELIPNCNKAPH 191
                    6*************************865554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-8153188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-5154188No hitNo description
PROSITE profilePS508889.261156224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-8159188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-6160191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MVNMRNQLPD WKTTIAKSST TTTTTYDGEY SQGFPYENYG VLPIDSVVLD PPTDNSHWNN  60
TSSSISAAAA AGGDDHKHFQ EIFQNLSYIQ LDPFLQMQQP TPNIFSHDKE VMLCGLSLEK  120
GEFSGKTTTS HEMETKPVML SGEFKQSKDE RPKRSRATEL HNMSERMRRN KIRGKLKVLQ  180
ELIPNCNKAP HXQLQXERAA KLPPLNPGPL TSVELCSVNH IPIPSSYLPQ RQIQPRFSHQ  240
SLSSVDLIPI SLFPERPHAE SLFSPSTSSQ SSPPRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951759.11e-117transcription factor bHLH69-like
TrEMBLA0A498HGS11e-118A0A498HGS1_MALDO; Uncharacterized protein
STRINGXP_008340282.11e-114(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2281233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-11phytochrome interacting factor 3-like 5