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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MDP0000173549 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 262aa MW: 29910.2 Da PI: 10.2225 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 27.2 | 1.3e-08 | 78 | 158 | 8 | 88 |
FAR1 8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88
k+ GF +++ +s ++++ + t+ C + g+ +e+k+++ k+rr + ++++gC +lk +k+ + w+++ + HnH+
MDP0000173549 78 KRNGFVIVTIRSDMGSKST-KPRVTLGCERGGRFKEKKTRAAKKRRGTGTKKCGCPFTLKGEKSAnGDGWMLKVVCGVHNHA 158
6789999988877764444.7899************99999*********************9998899************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 2.4E-6 | 78 | 158 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 262 aa Download sequence Send to blast |
MEHQIIIYDK SVRMERAKLL LEVVGLAQNV QRTTQDDNSA RDSGVSSDCV MDFTSEFTTY 60 VIFKTRESLM QWAREAGKRN GFVIVTIRSD MGSKSTKPRV TLGCERGGRF KEKKTRAAKK 120 RRGTGTKKCG CPFTLKGEKS ANGDGWMLKV VCGVHNHAST EYPDGRSYAG RLSEQETSLL 180 IDLSKSLVRP KEILSTLKQR DELNATTIRT IYNARQRQRV KEKAGRSQMQ QLLCKLNEHD 240 YVEWHRRCPM SDSVQDLFWA HP |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_028965241.1 | 1e-166 | uncharacterized protein LOC103411920 isoform X2 | ||||
| TrEMBL | M5VX46 | 1e-133 | M5VX46_PRUPE; Uncharacterized protein | ||||
| STRING | XP_008365826.1 | 1e-172 | (Malus domestica) | ||||
| STRING | XP_008381888.1 | 1e-164 | (Malus domestica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF180 | 11 | 22 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | MDP0000173549 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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