PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000174161
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 582aa    MW: 64918.8 Da    PI: 4.8869
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000174161genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind91.59.6e-291032462102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.TEEE---SSBTTTT...................... CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.gFkkvkdeekksks...................... 74 
                    Fl+k+++++e ++l+++isw + g+sfvv+d+ ef++ +Lp+ Fkh+nf+SFvRQLn+Y g + + + +  + +                      
  MDP0000174161 103 FLSKTFDLVEXPSLDSIISWGSGGRSFVVWDPLEFSRFILPRNFKHNNFSSFVRQLNTYvGLSLIMKLRIVNLNgngrgcsfidlvvriggfyekn 198
                    9**********************************************************88888877776655578899***************** PP

                    ....................XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
   HSF_DNA-bind  75 ....................kekiweFkhksFkkgkkellekikrkks 102
                                        +++ weF+++ F+kgk++ll++i+r+ks
  MDP0000174161 199 ifpseyvlergvrqigfrkvDTDKWEFANEAFQKGKRHLLKRIQRRKS 246
                    ***9999999988877765449************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.9E-4099244IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.3E-32100161IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.58E-21101161IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-11103126IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-25103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-11141153IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-11154166IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.3E-32193244IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MSPKDESHPK SPPTSAEFDP ESIGLSEFRP QVSAPLLGSQ PIPSFTSPVM EFEAFSSVNP  60
LGAFDFXEKV SIPTSSMGGG GAEDVVVPPQ PLECLQDTPV PPFLSKTFDL VEXPSLDSII  120
SWGSGGRSFV VWDPLEFSRF ILPRNFKHNN FSSFVRQLNT YVGLSLIMKL RIVNLNGNGR  180
GCSFIDLVVR IGGFYEKNIF PSEYVLERGV RQIGFRKVDT DKWEFANEAF QKGKRHLLKR  240
IQRRKSPQSL QVGSFTGPSA EAGKSGVEGE IETLRKERSX LMQEVXELQQ QQRGTVDHMK  300
VVNQRLQSAE QRQKQMVSFL TKMLQNPAFV ARLQQKTGQK DIGSSRVRRK FVKHQQHELS  360
KSDSYMEGQI VKYQPAWRNQ TISSTAPDSY PVPFEQSPHY PSQVTTGKLG LDAESTAFQF  420
VDAALDELAI TQGFLETPEQ EGEGASSMVT EDPFFKGKSV LSPQQEANPE HYVSFEEDLV  480
KDRTFPELFS PGMESMIKQE DIWSMNFDVS AGMSTSMNEL WGNPXNYDVP EVGLTGGLLD  540
VWDIDPLQEA GGLGINKWPA HESAFDEPQS QGVQCASKTT DP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-1410024426129Heat shock factor protein 1
5d5v_B3e-1410024426129Heat shock factor protein 1
5d5v_D3e-1410024426129Heat shock factor protein 1
5hdk_A3e-14100161768Heat shock factor protein 2
5hdk_B3e-14100161768Heat shock factor protein 2
5hdk_C3e-14100161768Heat shock factor protein 2
5hdk_D3e-14100161768Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237243LKRIQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028948181.10.0heat stress transcription factor A-3-like isoform X1
RefseqXP_028948182.10.0heat stress transcription factor A-3-like isoform X1
TrEMBLA0A498IJD10.0A0A498IJD1_MALDO; Uncharacterized protein
STRINGXP_008391748.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-75heat shock transcription factor A3