PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000174818

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 168aa MW: 19307.7 Da PI: 10.9254

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000174818	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.2	9.3e-23	31	99	1	69
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 rW++q +laL+++r +m+ ++r+++ k p W+ev kk+++ g++rs+k+Ckek+en+ k+++++keg + MDP0000174818 31 RWPRQDTLALLQIRADMDITFRDANIKCPSWKEVPKKLAALGYHRSAKKCKEKFENVYKYHRRTKEGPW 99 8****************************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.377	30	88	IPR017877	Myb-like domain
Pfam	PF13837	8.1E-14	30	97	No hit	No description
CDD	cd12203	4.05E-19	30	95	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MARIIIQVKK RSEMVIRKLS RGGERSFGGN RWPRQDTLAL LQIRADMDIT FRDANIKCPS 60 WKEVPKKLAA LGYHRSAKKC KEKFENVYKY HRRTKEGPWV LFKLGSTSQK QVISLMSLSH 120 QPPMARCSRA FLLDLLLTIL TQDLQHTAAF LPRTKTMADV DYTVTVGS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.10018	4e-93	fruit\| leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009343632.1	3e-41	PREDICTED: trihelix transcription factor GT-2-like
TrEMBL	A0A498IQS2	8e-40	A0A498IQS2_MALDO; Uncharacterized protein
STRING	XP_009343632.1	1e-40	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21033	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-34	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000174818