PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000176749

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 367aa MW: 39304.6 Da PI: 10.0744

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000176749	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.4e-09	216	260	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + ++Y+k L MDP0000176749 216 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIMDYVKFL 260 99*********************55......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.02E-14	209	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.783	211	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-14	213	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-6	216	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-10	217	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0031347	Biological Process	regulation of defense response
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MAQKESPGRQ KNKSSKQKIQ KLSQSSKLKA LLFHFSLLHV PALFINPNSL PTDSPRLGLT 60 RSLPPPFPPM ANNPSEAQAD DFLEQILGLQ NFASADANLA RSDGGLAGGQ VSQASMMLQL 120 NSGNGSGHIG GGGGGFHGGV FPLGLSLEQG KAGFLKHEEA SGSGKRFQDD VVDSRGSSVK 180 NVFHGQPISN TVAAAPHPPA MRPRVRARRG QATDPHSIAE RLRRERIAER IRALQELVPS 240 VNKTDRAAML DEIMDYVKFL RLQVKVLSMS RLGGAGAVAP LVTDIPLSSV EEEGGEGGRN 300 QPAWDKWSND GTERQVAKLM EENVGAAMQF LQSKALCIMP ISLASAIYHT QSPDTSSVVK 360 PEMNPPS

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MAQKESPGRQ KNKSSKQKIQ KLSQSSKLKA LLFHFSLLHV PALFINPNSL PTDSPRLGLT  60
RSLPPPFPPM ANNPSEAQAD DFLEQILGLQ NFASADANLA RSDGGLAGGQ VSQASMMLQL  120
NSGNGSGHIG GGGGGFHGGV FPLGLSLEQG KAGFLKHEEA SGSGKRFQDD VVDSRGSSVK  180
NVFHGQPISN TVAAAPHPPA MRPRVRARRG QATDPHSIAE RLRRERIAER IRALQELVPS  240
VNKTDRAAML DEIMDYVKFL RLQVKVLSMS RLGGAGAVAP LVTDIPLSSV EEEGGEGGRN  300
QPAWDKWSND GTERQVAKLM EENVGAAMQF LQSKALCIMP ISLASAIYHT QSPDTSSVVK  360
PEMNPPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	220	225	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.16729	0.0	bud\| fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP689410	0.0	KP689410.1 Prunus pseudocerasus isolate Unigene16804 bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008382959.1	0.0	transcription factor UNE12-like
Refseq	XP_009367753.1	0.0	PREDICTED: transcription factor UNE12-like
Swissprot	O22768	1e-130	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A498ITJ2	0.0	A0A498ITJ2_MALDO; Uncharacterized protein
STRING	XP_009367753.1	0.0	(Pyrus x bretschneideri)
STRING	XP_008382959.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5449	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-102	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000176749

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]