PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000177089

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 209aa MW: 23220 Da PI: 8.6516

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000177089	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00026	32	52	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C C+++F + L +Hi +H MDP0000177089 32 CRLCDRVFMSTQALISHIDSH 52 ******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.93	30	57	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	32	52	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSRYNWNLRQ GNMLGSSDPA PPRATDLTQI ACRLCDRVFM STQALISHID SHMGDGDRTT 60 GRLRQLNNLP NNINAFISSN APTRPVPIFP LTNPFHQRSL FHGANNQIGF TTPPLPPPQP 120 HYQLPCAQQP QVPHYSLPRN PNVNSGAAAS HXMMMPYGNQ MAHVVREENY SDCTRPFLSQ 180 LERPIPSINF GLDASGNAKS DHLDLALKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021804636.1	4e-39	uncharacterized protein LOC110748960
TrEMBL	A0A498HNU3	1e-150	A0A498HNU3_MALDO; Uncharacterized protein
STRING	EMJ25623	3e-42	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14890	8	12

Link Out ? help Back to Top
Phytozome	MDP0000177089