PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000178778
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 191aa    MW: 21425.8 Da    PI: 8.2804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000178778genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-104888954
                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    r RR+ri ++f  L++l+P       +Kl+ +++Le+A++Y+k L
  MDP0000178778 48 ARERRHRISDRFKILQSLVPGG-----TKLDTVSMLEEAIHYVKFL 88
                   699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.443988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.05E-144592No hitNo description
SMARTSM003531.3E-124594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-114594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-84888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1348110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDYFTATNDS SSNNFSKSSS SVTKNNRGGG KNKSKGVRLS TDPQSVAARE RRHRISDRFK  60
ILQSLVPGGT KLDTVSMLEE AIHYVKFLKT QIWLHQSMIN SVDDHHDPSP SMLMDIPAHR  120
HGLHPTGCFD QLPPQHHQQT HDLFAHSNFV SAAXSVQPPS PAVNIPIMPE YNCFQGQETL  180
ANIEAYMKYY S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388859.21e-142transcription factor bHLH140-like
TrEMBLA0A498IE111e-141A0A498IE11_MALDO; Uncharacterized protein
STRINGXP_008388859.11e-142(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.11e-31APRATAXIN-like