PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000178901
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 1007aa    MW: 111408 Da    PI: 5.8607
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000178901genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.3e-08850892346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rW++++ el+++a++q G++ ++ I +    gRt+ q+k+++ k
    MDP0000178901 850 RWSKQDTELFYEAIQQCGSD-FTMIQELYFPGRTRHQVKLKFKK 892
                      9*******************.*****98766**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.6E-26841929No hitNo description
PROSITE profilePS512939.274846895IPR017884SANT domain
SMARTSM007172.7E-6847896IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-5850892IPR009057Homeodomain-like
CDDcd001679.74E-6850892No hitNo description
SuperFamilySSF466893.96E-10850898IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1007 aa     Download sequence    Send to blast
MRNELRFGAL IEVVDAYTLL EHNXPHEYPR AQNLKSWHSE ITHLSKLATR PSSSEPLLRL  60
QLLDFSIRFQ FSLSQISASL ALDLPSVTLK RRFVLGKVCE GPISEIRDFN RSCRDKGSFL  120
KKEIINKSGR LRAVGTIPSV RPVPVPSLSC LLGRTVSHLC SSNLRRRAAT GEVATDLVLL  180
LVGRPSKGRS PATQLSRSKS GSLTPPPVSS PFPDPSSGPF HSLSFSLLRT VCEQIVFQIL  240
PFFDSIVKCA LLRSSSTFSL SGISALRSSK LSSLYYCESY SDAFSSLTLF KDKASAIIEM  300
SDWDDVFLAP AGVPARAGGR FRPKAKPRPS RVASTAAAPA LPIVITEIHV TLSTTVSDSV  360
PSVDVGDSKL TDQVGSIEPS ENNEIPLSDG KKVTGPCEST ADVAGSDGKA SGENADIFSG  420
LECLDDSISQ TTRGTAEFAV NKSGDKANTG TKPEAETGSD YCTTQDPMSC REVSVSNKQG  480
EIEPEVDGAF SDFEVLDVGS DVAISSERHA GKHQPKLKVK KGKENIHIPC SEVEPNMGSQ  540
AGHLVHFETG DMNESSLPAF PTRHVIDHPS PRLGDSSTLN PTPDSQVNTE NLAETNHSDG  600
AILGDAVHSE DVGGTPEKVG RKSRNRNTST TSDLPQKRKS SAIEKAEGET SSRQLRKRVP  660
HKQVDELADE ANDDSFTAEP SSDSKINEDE DNIDEYREHE TSQRKRAPRK SKKPVSEKEP  720
VRKRKKTKEA SDQSTKDASK KFSHSTRRNR RQVDKSLLEI PEEEFDPYKL SLKDLIRLAE  780
HKELLKIKEA RKLTTRQPNE STNSDSHKEG SHNEEFYPSE HGTDENQATY HVNSSLLNYQ  840
TYMDKAPTAR WSKQDTELFY EAIQQCGSDF TMIQELYFPG RTRHQVKLKF KKEERQHPLR  900
ISEAVLSRST HSTDHSQFTS YIEKLQQAAQ ANKESNADES VDMTSKEEGL REQTRDTDER  960
MEKPESEEVQ DQEADVAEVQ DQEAVAAEVS NPLKSDEIDE EDFTWSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1703725RKRAPRKSKKPVSEKEPVRKRKK
2721725RKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.6220.0root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008364966.10.0transcription factor TFIIIB component B'' homolog isoform X1
RefseqXP_008364967.10.0transcription factor TFIIIB component B'' homolog isoform X1
RefseqXP_008364968.10.0transcription factor TFIIIB component B'' homolog isoform X1
TrEMBLA0A498IZ320.0A0A498IZ32_MALDO; Uncharacterized protein
STRINGXP_008364966.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-44MYB_related family protein