PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000179049
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 433aa    MW: 46708.6 Da    PI: 9.0858
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000179049genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002187209223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     C+ Cg+ F+  ++L++H+   H
  MDP0000179049 187 ACSQCGEIFPKXESLEHHQAIrH 209
                    6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.12186214IPR007087Zinc finger, C2H2
PROSITE patternPS000280186209IPR007087Zinc finger, C2H2
SuperFamilySSF563993.93E-25211430No hitNo description
Gene3DG3DSA:3.90.228.109.3E-14220430IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MALFPFAPEA TEPKKKETPP SKRRQKQSSS TNKKQQKPPS SSSSSSSWDH IKNLLTCKQI  60
EGSRVHDPSK NNIVGGAAAX HGGGYSKVGS SCSSICSFRD VVHGNTRVVH RGDSSSPESS  120
TLGQETGLLA RKPATRSIRS NGSGSSAAYQ TSSSSRGMQF RKLSGCYECH MIVDPSRYPV  180
PRSTICACSQ CGEIFPKXES LEHHQAIRHA VSELGVEDSG RNIVEIIFKS SWLKKDTPFC  240
XIEXILKVQN TQRTIQRFED CRDAVKNRAL XSTRKNPRCA ADGNELLRFH CTSISCTLGA  300
RGSSSLCDSV PGCGVCTIIR HGFQGKAVAE GDQGGGSKGV RTTASSGRAH DSFNCTDGRR  360
AMLVCRVIAG RVRRIADDAP PEEDGLXQXX AAAGSYDSVA GFAGIYSNLE ELVVYNPKAI  420
LPCFVVIYKA MES
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.111370.0bud| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008364931.20.0uncharacterized protein LOC103428594
TrEMBLA0A498JCK00.0A0A498JCK0_MALDO; Uncharacterized protein
STRINGXP_008364931.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-161C2H2-like zinc finger protein