PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000179718
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 171aa    MW: 20474.3 Da    PI: 9.471
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000179718genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.71.3e-17941133
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCda 33
                   +rien + rqvtf+kRr+g++KK +ELSvLCda
  MDP0000179718  9 SRIENRTTRQVTFAKRRAGLIKKTHELSVLCDA 41
                   59******************************7 PP
2K-box59.81.1e-20841681094
          K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                    +++++e+++ el+k+++e++ L+ ++ ++ GedL    + +L +Le+qLe+s++++R++K e+l +q+++l    k+l+een++L
  MDP0000179718  84 QHNDTEYMNAELRKMRRETQHLELSLQRYTGEDLRCVRFDDLVELEHQLEESVNRVRARKFEVLQQQTDNLLATTKRLEEENEQL 168
                    57889******************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.36E-18142IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-19168IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.469141IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-15323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-151041IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-152338IPR002100Transcription factor, MADS-box
PfamPF014864.0E-1984168IPR002487Transcription factor, K-box
PROSITE profilePS5129713.27488171IPR002487Transcription factor, K-box
Gene3DG3DSA:1.20.120.1602.7E-4118167IPR008207Signal transduction histidine kinase, phosphotransfer (Hpt) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004871Molecular Functionsignal transducer activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGRGKITISR IENRTTRQVT FAKRRAGLIK KTHELSVLCD APDRPCHFLK HWQDVSVLHR  60
SYFDFWHGGA YSKIPGYKRI RVPQHNDTEY MNAELRKMRR ETQHLELSLQ RYTGEDLRCV  120
RFDDLVELEH QLEESVNRVR ARKFEVLQQQ TDNLLATTKR LEEENEQLFH L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028958765.19e-84MADS-box protein FBP24-like
TrEMBLA0A498JUU13e-82A0A498JUU1_MALDO; Uncharacterized protein
STRINGXP_008346100.16e-85(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-33MIKC_MADS family protein