PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000179986

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

G2-like

Protein Properties

Length: 204aa MW: 23598.8 Da PI: 7.2718

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000179986	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.7	7.4e-30	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt++LHe+Fve+v+ LGG+ kA Pk+il+lm+v+gLt+ hvkSHLQk+R MDP0000179986 40 KTRIQWTQDLHEKFVECVNYLGGAYKAPPKSILKLMNVDGLTIFHVKSHLQKFRN 94 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.164	37	97	IPR017930	Myb domain
SuperFamily	SSF46689	6.09E-17	38	94	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-21	40	94	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	7.3E-26	40	94	IPR009057	Homeodomain-like
Pfam	PF00249	2.5E-6	44	92	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-16	125	171	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MNEQKIDCQE RIQQSHDYIS KFVSTSYGYS XSTRHXLLSK TRIQWTQDLH EKFVECVNYL 60 GGAYKAPPKS ILKLMNVDGL TIFHVKSHLQ KFRNSEYPPG SAKGKXEKRT TSNVEPQLDV 120 ETXLHIKKAI QLELDVQQHL HEQLEIQRNL QLRIEEQGKQ LKNIIELQLK TIIDLQLKNS 180 DTTFYEGAPL SSLDDEFIGL SINT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009370155.1	1e-100	PREDICTED: myb family transcription factor PHL5-like
Swissprot	Q0WVU3	5e-58	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A498IIX6	1e-112	A0A498IIX6_MALDO; Uncharacterized protein
STRING	XP_009370155.1	2e-99	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000179986