PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000180046
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 1288aa    MW: 146221 Da    PI: 5.1117
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000180046genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.54.1e-13228151128
            NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +k+++++w+fFs+rd ky  g r++rat++g+Wk+tg d++++               y    ++ge+tdWvmhey+l
  MDP0000180046  22 LKTGDRQWFFFSPRDXKYXXGXRSSRATRHGFWKTTGXDRTIVX--------------Y----SRGERTDWVMHEYTL 81 
                    567899***********************************999..............6....68899********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.6191122IPR003441NAC domain
PfamPF023651.7E-82181IPR003441NAC domain
SuperFamilySSF1019412.09E-2123104IPR003441NAC domain
SuperFamilySSF522004.19E-33209358IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101406.9E-19214345IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010425.391216360IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002559.3E-35217360IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015821.5E-34218388IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525404.16E-38383583IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009313.7E-9405476IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3002.9E-7405477IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003642.5E-9423438No hitNo description
PfamPF009313.0E-12488591IPR002182NB-ARC
SuperFamilySSF467851.33E-8559665IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520581.19E-34643971IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.3E-24691969IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514507.589889910IPR001611Leucine-rich repeat
PRINTSPR003642.5E-9907923No hitNo description
PROSITE profilePS514505.617911933IPR001611Leucine-rich repeat
SuperFamilySSF497649.29E-3111621258IPR008978HSP20-like chaperone
Gene3DG3DSA:2.60.40.7901.2E-2711641253IPR008978HSP20-like chaperone
PROSITE profilePS5120315.79811641253IPR007052CS domain
PfamPF049696.8E-1511681243IPR007052CS domain
CDDcd064662.42E-2711701253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1288 aa     Download sequence    Send to blast
MSDWIDLTYT LVIVDGFELS PLKTGDRQWF FFSPRDXKYX XGXRSSRATR HGFWKTTGXD  60
RTIVXYSRGE RTDWVMHEYT LNEEELKRCE NVQQYYALYK VFQKSGPGPK NGEQYGAPFS  120
EEDWVDDESP VIKTAADRQI SVKQAVDVPI DNVRVNWDAH YALNDIEESM TQIADGSVLS  180
EMDWFDDTAP QISNSICSDK KSLEQQLMAS SSKNDRVYDV FLSFGGEDTR WTFTDHLYCT  240
LEDHQFNVFM YGDEYDYKLE KSNGAIPEHL IQEIERSKVA VVVFSRGYPE SMWCLEELVK  300
IMKCRRSLGQ IFFPIFYDID PLDVLNQSGS FAQAFQKHEL KIKEEKVRLW RNALKEAGLL  360
AGLNIRETDG HEGNFIRNVI SQITGKLSIT TCLEVPTSLV GIDSRMREIS KHLDIGGSND  420
VRIIGILGMC GLGKTTVAKA VFNKHLHSFD SASFVQSTRE KNLVDLQEQL LSDILKPAYI  480
VICPLPAMNE REALELLSWH ALRKNYPNEE YVELSRKAVG YCGGLPLALE VLGSYLHTKS  540
TSEWETVFDK WKRSQPYREI HRRLEISYDG LTDDDVKAIF LDISCFFTGM NKDYVMTVLD  600
GCQFYPEIGI QELQDQCLVT VDKEGNLMMH DLIQGMGREI VRAESPDNPG KRSRLWHTED  660
ITDVLMKESG TEDVGGLAFD TQEFDARSFS SESFRNMRSL RLLKLNNIKL TGSYHNLSKE  720
LRWLCWHGFX LKVIPDDFNQ PNLVAIDFTN SKLIRVWEDT DVIHPSIGYL ERLSLVNLED  780
CRMLEYFPVD FYKSKSVKTL ILNGCLRFRI LIDNLGQMVS LTTLKANHTM ISQGPSSIVR  840
LKNLVSLFLW GLRGSPSSNL LRPSLTFLGL GNCYLTDDSI PKDLGSLFSL EILELDGNWF  900
YSLPSLSGLS KLKMLDLSYC TALLEIPDLP RSLEILRANH CISLAKLPNF SEMSSMAELH  960
LNHSPKLTEI LGLHKHGDIF LNGIYDIPEW FQFVAIHEPN DVHFKVPQII GRNFRGLTVC  1020
CIFKTYCPGF TVTNITKGKA LHIWEESTCW VADSVLRLQS VLSNDVLHLQ SGDEVSISAV  1080
TEAHGRGIVM KTGVNLVWAD GDGGDAYSSI DEIGAVPSNT TSDETLPSPS VHTDGCPPMA  1140
SDLKKREKEA FIYDPLELAV ASVKPKYRHE FYQKPEEVVV TIFAEGIPAN DVKVDFGEQI  1200
LGVSIDVAGE DAYYFRPRLF GKIIPEKCRF DVLSTKVEIR LAKAEPLHWT SLEISKDKGL  1260
LAQRANSTDF WAEGQNTMKD SEPFVFFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2xcm_C1e-3911661256292SGT1-LIKE PROTEIN
2xcm_D1e-3911661256292SGT1-LIKE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1831011e-126GU183101.1 Malus hupehensis sgt1-b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347425.10.0PREDICTED: TMV resistance protein N-like
RefseqXP_009347433.10.0PREDICTED: TMV resistance protein N-like
STRINGXP_009347425.10.0(Pyrus x bretschneideri)
STRINGXP_009347433.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.12e-56Disease resistance protein (TIR-NBS-LRR class)