PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000180683

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 373aa MW: 42023.4 Da PI: 9.1669

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000180683	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.1	4.1e-54	8	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeel+ +yL kkv++++l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ MDP0000180683 8 LPPGFRFHPTDEELILHYLIKKVASTPLPV-SIIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVAPs 102 79**************************.89***********988899***********************************998 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfykgr pkg kt+W+mheyrl MDP0000180683 103 gGRQNVGVKKALVFYKGRPPKGIKTNWIMHEYRL 136 88889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.29E-64	6	173	IPR003441	NAC domain
PROSITE profile	PS51005	62.069	8	173	IPR003441	NAC domain
Pfam	PF02365	3.8E-27	9	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MKNPESRLPP GFRFHPTDEE LILHYLIKKV ASTPLPVSII AEVDIYKFDP WELPAKAAFG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVA PSGGRQNVGV KKALVFYKGR 120 PPKGIKTNWI MHEYRLPESP NNYTTTTNHH RAVKLNDLSM RLDDWVLCRI YKKSNVVTSA 180 AALPNDQDQD VQGEEDFLHD ILLPSLKSPF PSLDHNMMST STTSSLKPQK SCSFSNLLDA 240 MDYSLLTSIL ADGQYYIPTG TGLQSTTPNK FSYSCTGSTS TGLDPQPLFN TNISSNRSHL 300 FQTLPQYNCL NLPSSAPNTE NRLKRQHSIT DDRGMLLYPS KKDVNSNCSF TNTANSFLNQ 360 QLLLSNPRFH FQE

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MKNPESRLPP GFRFHPTDEE LILHYLIKKV ASTPLPVSII AEVDIYKFDP WELPAKAAFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVA PSGGRQNVGV KKALVFYKGR  120
PPKGIKTNWI MHEYRLPESP NNYTTTTNHH RAVKLNDLSM RLDDWVLCRI YKKSNVVTSA  180
AALPNDQDQD VQGEEDFLHD ILLPSLKSPF PSLDHNMMST STTSSLKPQK SCSFSNLLDA  240
MDYSLLTSIL ADGQYYIPTG TGLQSTTPNK FSYSCTGSTS TGLDPQPLFN TNISSNRSHL  300
FQTLPQYNCL NLPSSAPNTE NRLKRQHSIT DDRGMLLYPS KKDVNSNCSF TNTANSFLNQ  360
QLLLSNPRFH FQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-71	5	175	12	170	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.14406	0.0	fruit\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00333	DAP	Transfer from AT3G04070	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF198115	0.0	KF198115.1 Malus hupehensis NAC domain protein (NAC24) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001280963.1	0.0	NAC transcription factor 29
Swissprot	Q84TD6	1e-98	NAC47_ARATH; NAC transcription factor 47
TrEMBL	S5RDR3	0.0	S5RDR3_MALHU; NAC domain protein
STRING	XP_008391673.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6621	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	4e-98	NAC domain containing protein 47

Link Out ? help Back to Top
Phytozome	MDP0000180683

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]