PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000180963

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

HD-ZIP

Protein Properties

Length: 242aa MW: 27372.4 Da PI: 7.9323

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000180963	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4e-19	91	145	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k MDP0000180963 91 RKKLRLTKEQSTLLEESFNRHSTLNPAQKQSLAEQLNLKPRQVEVWFQNRRARTK 145 678899***********************************************98 PP
2	HD-ZIP_I/II	117.6	6.8e-38	91	178	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq++lLEesF+++++L+p +K++la++L+l+prqv+vWFqnrRARtk+kq E d+e+Lk+++ +l en+rL++e +eL+ MDP0000180963 91 RKKLRLTKEQSTLLEESFNRHSTLNPAQKQSLAEQLNLKPRQVEVWFQNRRARTKLKQSEXDCEFLKKCCXSLXIENQRLKQELQELK 178 69*************************************************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-18	79	148	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.313	87	147	IPR001356	Homeobox domain
SMART	SM00389	1.6E-15	89	151	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-16	91	145	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.0E-18	91	145	IPR009057	Homeodomain-like
CDD	cd00086	8.30E-17	91	148	No hit	No description
PROSITE pattern	PS00027	0	122	145	IPR017970	Homeobox, conserved site
SMART	SM00340	2.5E-13	147	192	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MDDDEAACST ELQLGLGVCE YASRQEKKDN PLVCLDLLFA LCPKQEVPSS DDHIANGSGL 60 KTMDEDEDSY ERSTEHTNIK GVIMNNKNVV RKKLRLTKEQ STLLEESFNR HSTLNPAQKQ 120 SLAEQLNLKP RQVEVWFQNR RARTKLKQSE XDCEFLKKCC XSLXIENQRL KQELQELKSL 180 NGNGTSPLYI QIPKATMLTM CPSCEKMVKA RHNNQAAAKK AEDLNVVRKS SNKLQGGFDG 240 TI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009341742.1	1e-163	PREDICTED: homeobox-leucine zipper protein HAT9-like
Swissprot	P46604	2e-50	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A498I5Q8	1e-176	A0A498I5Q8_MALDO; Uncharacterized protein
STRING	XP_008390670.1	1e-177	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5664	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	7e-53	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	MDP0000180963

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]