PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000181482
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 645aa    MW: 70467 Da    PI: 4.5239
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000181482genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.17.4e-1382165741374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    lv++L++cAeav++++l+la+al++++  la+ +   m+++a+yf+eALa+r++r    +y    p++  +++ s+ l++   f+e++P+lkf+h+
  MDP0000181482 216 LVHTLMACAEAVQQENLKLADALVKHVGLLAAAQTGXMRKVATYFAEALARRIYR----IY----PQDCLDSSYSDILQM--HFYETCPYLKFAHF 301
                    689****************************************************....44....444443335555444..5************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+++g++La++Ae++gv+fef+ +va++l+dle++
  MDP0000181482 302 TANQAILEAFATATRVHVIDFGLKQGMQWPALMQALALRPGGPPVFRLTGIGPPQPDNTDVLQQVGWKLAQLAETIGVEFEFRGFVANSLADLEPS 397
                    ************************************************************************************************ PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                    +L+++++Ea aVn+v++lh ll++ +++++    vL+ +k ++Pk+ ++veqea+hn++ Fl+rf+eal+yys+lfdsle +  +  +++ +++++
  MDP0000181482 398 MLDIRQDEAXAVNSVFKLHGLLARAGAVDK----VLSSIKAMKPKIXTIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGS--SGPSQDLVMSEV 487
                    **********************88888877....*********************************************999..566999****** PP

           GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +lgr+i+nvvaceg +r+erhetl +Wr r+++aGF pv+l+++a kqa++ll  ++ +dgyrv+e++gsl+lgW++rpL+++SaW+
  MDP0000181482 488 YLGRQICNVVACEGGDRVERHETLTQWRGRMDSAGFDPVHLGSNAFKQASMLLDLFAgVDGYRVQENNGSLMLGWHTRPLIVTSAWK 574
                    **************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120415.8E-3349113IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011294.2E-3549121No hitNo description
PROSITE profilePS5098566.624190553IPR005202Transcription factor GRAS
PfamPF035142.6E-135216574IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MKREHCHSSA TASQNNSKXE YSSXPSSALN GKAKIWEDEQ GYSGGGDMDE LLAVLGYKVR  60
TDDMADVAEK LEQLEMVMGS AQEDGVSQLS DTVHYNPSDL SGWVQSMLSE LNTGDDMPSI  120
NGPLLAPGES STITSTSFCN SQRTRVFSDD SEYDLRAIPG VAAYPPAHSS SETESTRKRL  180
KXSIGXNSGG IEVSGAVSDP IRPLVLVDSQ ETGVQLVHTL MACAEAVQQE NLKLADALVK  240
HVGLLAAAQT GXMRKVATYF AEALARRIYR IYPQDCLDSS YSDILQMHFY ETCPYLKFAH  300
FTANQAILEA FATATRVHVI DFGLKQGMQW PALMQALALR PGGPPVFRLT GIGPPQPDNT  360
DVLQQVGWKL AQLAETIGVE FEFRGFVANS LADLEPSMLD IRQDEAXAVN SVFKLHGLLA  420
RAGAVDKVLS SIKAMKPKIX TIVEQEANHN GPVFLDRFTE ALHYYSSLFD SLEGSSGPSQ  480
DLVMSEVYLG RQICNVVACE GGDRVERHET LTQWRGRMDS AGFDPVHLGS NAFKQASMLL  540
DLFAGVDGYR VQENNGSLML GWHTRPLIVT SAWKLASSTD RXSGDYNESE TVKPIQSNQS  600
SGVNCVVVIV MGRVDLGGDE DEDEDEDDVD DSKYRNMACI CYVTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6821157314378Protein SCARECROW
5b3h_A2e-6821157313377Protein SCARECROW
5b3h_D2e-6821157313377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.137230.0bud| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0078830.0DQ007883.1 Malus x domestica DELLA protein (RGL2a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315916.10.0DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLH2EII80.0H2EII8_MALDO; Spur-type DELLA protein
STRINGXP_008381346.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0RGA-like 2