PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000181583
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 319aa    MW: 36835.4 Da    PI: 9.4651
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000181583genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF793.3e-2561111151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                    +rien + rqvtf+kRr+g++KK +ELSvLCda++ ++ifsstgk++ y+s
  MDP0000181583  61 SRIENRTTRQVTFAKRRAGLIKKTHELSVLCDAQIGLVIFSSTGKMFQYCS 111
                    59***********************************************96 PP
2K-box60.56.7e-21130221898
          K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                    +  +++++e+++ el+k+++e++ L+ ++ ++ GedL    + +L +Le+qLe+s++++R++K e+l +q+++l    k+l+een++L + +
  MDP0000181583 130 RvPQHNDTEYMNAELRKMRRETQHLELSLQRYTGEDLRCVRFDDLVELEHQLEESVNRVRARKFEVLQQQTDNLLATTKRLEEENEQLFHLI 221
                    44678899*******************************************************************************97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.80153113IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-3753112IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-2954134IPR002100Transcription factor, MADS-box
CDDcd002656.48E-3954128No hitNo description
PRINTSPR004041.2E-265575IPR002100Transcription factor, MADS-box
PROSITE patternPS00350055109IPR002100Transcription factor, MADS-box
PfamPF003194.2E-2362109IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-267590IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-2690111IPR002100Transcription factor, MADS-box
PfamPF014861.5E-18133218IPR002487Transcription factor, K-box
PROSITE profilePS5129713.62137227IPR002487Transcription factor, K-box
Gene3DG3DSA:1.20.120.1607.9E-4167216IPR008207Signal transduction histidine kinase, phosphotransfer (Hpt) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004871Molecular Functionsignal transducer activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MRGRGEGGGR GQVRREERRR IRGRRNLSTG GVRVPSISSS FSYKLKKKTY INMGRGKITI  60
SRIENRTTRQ VTFAKRRAGL IKKTHELSVL CDAQIGLVIF SSTGKMFQYC SESSSMEELI  120
XRYQVTKGIR VPQHNDTEYM NAELRKMRRE TQHLELSLQR YTGEDLRCVR FDDLVELEHQ  180
LEESVNRVRA RKFEVLQQQT DNLLATTKRL EEENEQLFHL IKAHQAAAFG HDQAHLEAHE  240
QVENLEMLPK SEEHRHVLDQ FPFGGEEQPS SVLQLATLQP QPQFNPYPHQ PDHHHPGLLD  300
FNLSGPSMYG IVTVYEKGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-1953123169MEF2 CHIMERA
6byy_B4e-1953123169MEF2 CHIMERA
6byy_C4e-1953123169MEF2 CHIMERA
6byy_D4e-1953123169MEF2 CHIMERA
6bz1_A4e-1953123169MEF2 CHIMERA
6bz1_B4e-1953123169MEF2 CHIMERA
6bz1_C4e-1953123169MEF2 CHIMERA
6bz1_D4e-1953123169MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028958765.10.0MADS-box protein FBP24-like
TrEMBLA0A498JUU10.0A0A498JUU1_MALDO; Uncharacterized protein
STRINGXP_009353975.11e-170(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-58MIKC_MADS family protein