PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000181606
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 462aa    MW: 50877.1 Da    PI: 7.2424
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000181606genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17138187155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  MDP0000181606 138 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 187
                    78*******************......55************************997 PP
2AP240.18.8e-13230280155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  MDP0000181606 230 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 280
                    79********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-15138196IPR016177DNA-binding domain
PfamPF008475.2E-9138187IPR001471AP2/ERF domain
SMARTSM003802.0E-30139201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-16139195IPR001471AP2/ERF domain
PROSITE profilePS5103217.385139195IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-16230289IPR016177DNA-binding domain
CDDcd000182.45E-24230290No hitNo description
PfamPF008471.9E-8230280IPR001471AP2/ERF domain
SMARTSM003802.2E-31231294IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-15231288IPR001471AP2/ERF domain
PROSITE profilePS5103215.501231288IPR001471AP2/ERF domain
PRINTSPR003675.3E-6232243IPR001471AP2/ERF domain
PRINTSPR003675.3E-6270290IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MDESGTSNSS VVNADASSTN DDSCSTRAAR NDAVTTFNFG ILKVQGGDEE ENDDVAVTKE  60
LFPVTGGLNN WPGQAHGHGQ SSSSSLLVRK NLMELGFDLG GSGEVRLVQQ KQQQQPAAPP  120
PQQQQAKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR  180
AAIKFRGVDA DINYNLSDYE DDMKQMKNLT KEEFVHILRR QSTGFSRGSS RYRGVTLHKC  240
GRWEARMGQF LGKKYIYLGL FDSEVEAARA YDKAAIKCNG REAITNFEPS TYEGEMMSEA  300
GNEDGNHNLD LNLGISPPSF GTGQKEGEGH LQFHSNPFDV HNGKRMEHNV NVTMSDPPFR  360
GLMTSDHPPP LWNGVYPSYF PNQERATEKR LALGSQGPPN WXWQMHGQVT PMPLFSTAAS  420
SGFSFSANAP AAAVHPLQPP NPTALNLCFA SPAMAATHTS QQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.142730.0leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7844370.0KP784437.1 Rosa chinensis putative RAP2-1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385254.20.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK031e-113RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A498IJL30.0A0A498IJL3_MALDO; Uncharacterized protein
STRINGXP_008385254.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-117related to AP2.7