PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000182903
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CPP
Protein Properties Length: 527aa    MW: 56438.4 Da    PI: 7.6117
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000182903genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.11.7e-13133172242
            TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                    ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  MDP0000182903 133 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCCNNVEN 172
                    89**************************.********9875 PP
2TCR51.12.7e-16217256140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  MDP0000182903 217 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 256
                    589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-15132172IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.619133257IPR005172CRC domain
PfamPF036383.7E-10134169IPR005172CRC domain
SMARTSM011148.4E-20217258IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.9E-13220255IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MGEGDGADSA PKKAQSDAAA GAATTSSSSS MNDVPAKKLA RQLDFTVFGS XPXSVAVPEL  60
XKPPLPTVAV PPSLPKPPVV SXPVPVSVPQ QPHTLKPGSI LVEKFGFWIV RKPESPKSRP  120
RPNVDAKDGT PKKQKQCNCK HSRCLKLYCE CFASGIYCDG CNCVNCCNNV ENESARNDAI  180
EATLERNPNA FRPKIASSPH GARDTREEAG EVLILGKHNK GCHCKKSGCL KKYCECFQAN  240
ILCSENCKCM DCKNFEGSEE RQALFHGDHG NNMAYLQQAA NAAITGAIGS SGYASSPPVS  300
KKRKGQELFG PTAKDPSLHR IGQFQQGNNI RAPAPSPLSS VPVNHLGGTT GLGPSKFTYR  360
SLLADIIQPQ DLKELCSVLV VVAEEAAKTL ADQRNTAEKP TETSLASTTQ DRLQSEKESD  420
AQNAVADDRS SLNEADKISP EDSNSDGADV XKGRPMSPGT LALMCDEQDT MFMSAASNGL  480
MGDGNTSSRL PNGQGMTEVY AEQERIVLTK FRDCLNRLIT FGEIKGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-3113426611132Protein lin-54 homolog
5fd3_B1e-3113426611132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.303425e-40bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4840283e-87AM484028.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X101832.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008386297.20.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A498KCF50.0A0A498KCF5_MALDO; Uncharacterized protein
STRINGXP_008386297.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-175Tesmin/TSO1-like CXC domain-containing protein