PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000183226
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 22917.2 Da    PI: 9.9553
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000183226genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF771.4e-2468118151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                    +rien + rqvtf+kR +g++KK +ELSvLCda++ ++ifsstgk++ y+s
  MDP0000183226  68 SRIENRTTRQVTFAKRXAGLIKKTHELSVLCDAQIGLVIFSSTGKMFQYCS 118
                    59***********************************************96 PP
2K-box46.81.3e-16137199869
          K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                    +  +++++e+++ el+k+++e++ L+ ++ ++ GedL    + +L +Le+qLe+s++++R++K
  MDP0000183226 137 RvPQHNDTEYMNAELRKMRRETQHLELSLQRYTGEDLRCVRFDDLVELEHQLEESVNRVRARK 199
                    44678899******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.00260120IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-3560119IPR002100Transcription factor, MADS-box
CDDcd002654.59E-3661135No hitNo description
SuperFamilySSF554551.1E-2861141IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-266282IPR002100Transcription factor, MADS-box
PfamPF003192.1E-2269116IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-268297IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-2697118IPR002100Transcription factor, MADS-box
PfamPF014862.1E-13140199IPR002487Transcription factor, K-box
PROSITE profilePS5129710.767144199IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSSLGFLENQ VPTSDHTSFV XCSTLSFKNF IXNLSTGGVR VPSISSSFSY KLKKKTYINM  60
GRGKITISRI ENRTTRQVTF AKRXAGLIKK THELSVLCDA QIGLVIFSST GKMFQYCSES  120
SSMEELIXRY QVTKGIRVPQ HNDTEYMNAE LRKMRRETQH LELSLQRYTG EDLRCVRFDD  180
LVELEHQLEE SVNRVRARK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-2060130169MEF2C
5f28_B4e-2060130169MEF2C
5f28_C4e-2060130169MEF2C
5f28_D4e-2060130169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028958765.12e-96MADS-box protein FBP24-like
SwissprotQ9ATE52e-55FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A498JUU16e-95A0A498JUU1_MALDO; Uncharacterized protein
STRINGXP_008346100.13e-96(Malus domestica)
STRINGXP_008372113.12e-93(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.36e-49MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]