PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000183819
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 1025aa    MW: 115357 Da    PI: 6.3618
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000183819genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43.1e-09201248455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++iN ++  L+el+P +    +k   Ka +L + +++++sLq
  MDP0000183819 201 SHSLAERARREKINARMKLLQELVPGC----NKISGKALVLDEIINHVQSLQ 248
                    8**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-15195265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-8195252No hitNo description
PROSITE profilePS5088814.996197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-15197261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6201248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-9203253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS513755.941461495IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.283496526IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.2E-4515580IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137512.09527561IPR002885Pentatricopeptide repeat
PfamPF130417.8E-12527573IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.6E-6529563IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.774562596IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.708597627IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.005628662IPR002885Pentatricopeptide repeat
PfamPF130419.0E-8628674IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.2E-5630660IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.2E-4631827IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.5663697IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.936698728IPR002885Pentatricopeptide repeat
PfamPF015350.0049702728IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.602729759IPR002885Pentatricopeptide repeat
PfamPF130414.5E-9729777IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.6E-6731765IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.958765801IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.662802836IPR002885Pentatricopeptide repeat
PfamPF015350.0054805830IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.6E-4806830IPR002885Pentatricopeptide repeat
PfamPF144322.0E-378911014IPR032867DYW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1025 aa     Download sequence    Send to blast
MDPTGATVPX STLPGPELES LQFREEIHQL MTVPPENASS FTALLELPPT QAMELLHLSP  60
EPDCAPPLAG VSADPQHXPY VQQPPFNSSL IFPTNSALTE RTAKFSIFAG NGSPDISSVP  120
SNSGAELEKV KTEPAETDSN PNSSQLTLDG TRNNQRNSAK RKEREKKVKA PTKKCKTEIK  180
EDAEKMPYVH VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCNKI SGKALVLDEI  240
INHVQSLQHQ VEFLSMRLAA VNPGIDFNLD SILAAESGPL MESNFASMVT PLMWPEVSIN  300
AHRQPYQQQW HFDALQQPGW GREEENHTFI XPEPPLISCD SSANSENLQT SHLKKEINYT  360
GRLLTYLVED LYSFDVENLF FEVNTTXLHP HLSRLLDLNL GISLSSLNNL EGXLLEMVKQ  420
FXRQLSLSSF PPIPQNLKSL CSNGQLREAL LEMAAIGLEM KFDGYYTLLN ECINRRAFRE  480
GQRVHAHMIK TCYLPPMHLR TRLIVFYNNC DRLGDARRVL DEMPERNVVS WTAMVSAYSK  540
RGYASEALNL FLQMFRSGTE PNEFTFATLL TSCTGASGLD LGRQIHSLII RRNFESHIFV  600
GSSLLDMYAK AGRIYEARGV FDCLPERDVV SCTAIISGYA QLGLDEEALE LFRQLQREGM  660
ISNYVTYASV LTALSGLAAL DLGRQVHNHV LRRELPSYVV LLNSLIDMYS KCGNLSYSRR  720
IFDSMPERTV ISWNAMLVGY SKHGMGKEVV KLFKLMKEES KARPDSVTFL AVLSGCSHGG  780
MEDRGLEYFY EMEKGENGIE PELEHYGCVV DLLGRAGRVE EAFEFIKKMH FEPTAAIWGS  840
LLGACRVHSN IDIGEFVGFR LLQIEPENAG RWEDVRTVRE LMLEKAVIKE PGRSWIELDQ  900
ILHTFHASDR SHPRREEVSA KVKELSIKLK EAGYVPDLGC VLYDVDEEQK EKILLGHSEK  960
LALAFGLIAT AEGVPVRVIK NLRICVDCHN FAKLVSEIYR REVSLRDKNR FHHIVGGICS  1020
CGDYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D7e-724158462332PLS9-PPR
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.430.0bud| flower| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392119.20.0putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial
SwissprotQ9LIC30.0PP227_ARATH; Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial
TrEMBLA0A498I5830.0A0A498I583_MALDO; Uncharacterized protein
STRINGXP_008392119.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.25e-96bHLH family protein
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]