PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000184307
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 351aa    MW: 39987.8 Da    PI: 7.8061
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000184307genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.13.1e-31187241155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+r+rW+++LHe+Fve+v++LGG++kAtPk+il++m+++gLt+ hvkSHLQkYR+
  MDP0000184307 187 KTRIRWNQDLHEKFVECVNRLGGADKATPKAILKMMGLDGLTIFHVKSHLQKYRI 241
                    68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.31184244IPR017930Myb domain
SuperFamilySSF466891.79E-16185241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-27185242IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-22187242IPR006447Myb domain, plants
PfamPF002497.5E-9191240IPR001005SANT/Myb domain
PfamPF143792.1E-15284332IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MNEKKIDCQE RNQQIHELIG ECSFELGNQS CQIFGQQQQQ AWNNMGIWVQ QPTMDHEXSL  60
LQNLGPPKTP SSIISRFESP VSAFYATELY MGGFPQYDSQ AXQNPQFPSG QSNXESYSSM  120
NSSEQAPNFD IRNTLQSIGY CNSFTTXPVT QLSFFSGQGK QPPRISSGHV SDCYGDSPSS  180
SPVLSSKTRI RWNQDLHEKF VECVNRLGGA DKATPKAILK MMGLDGLTIF HVKSHLQKYR  240
IAKYLPDPAE GKSEKRTTLN VEPQLNVKTL LQTYDVNISR SCLQIKEALQ LQLDVQRXLH  300
EQLEMQTQRK LQLRIEEQGK QLRKMFNLQQ QTTRTHLDTA SVELLVQWKS Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-22187244259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-22187244259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-22187244259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-22187244259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-22187244259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-22187244259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-22187244259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-22187244259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358005.20.0myb family transcription factor PHL5-like isoform X1
SwissprotQ0WVU32e-60PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A498IGE10.0A0A498IGE1_MALDO; Uncharacterized protein
STRINGXP_008358005.11e-178(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-60G2-like family protein