PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000185616
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CO-like
Protein Properties Length: 453aa    MW: 50302.2 Da    PI: 5.208
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000185616genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box301e-091660341
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                   +r C+ + +k+++++C  ++ +lCe C ++ H+       H++v 
  MDP0000185616 16 ARACDSCIKKRARWYCAADDAFLCEACDSAVHSAndlarrHERVL 60
                   578*****************************6678888898875 PP
2CCT68.32.1e-23398441144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  MDP0000185616 398 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 441
                    9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.7791461IPR000315B-box-type zinc finger
SMARTSM003361.6E-111461IPR000315B-box-type zinc finger
PfamPF006432.4E-71660IPR000315B-box-type zinc finger
CDDcd000212.54E-91761No hitNo description
PfamPF062036.1E-18398440IPR010402CCT domain
PROSITE profilePS5101716.083398440IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MNSSKKVAHA VGGKTARACD SCIKKRARWY CAADDAFLCE ACDSAVHSAN DLARRHERVL  60
LKTASSLKPS NKDDRTXAVS KTSXAPSWHR GFTRKPRTPR GGKSMTHHGK SKEGIRNLFP  120
QVPEVGGDDN NSYDEENDED QQLLYRVPIF DPSVAELCSN SGNSSEDAVA NYEASNLSTV  180
SDHVGSQSKA VSSLPNFNGH DGFLLPSDMD LAEFAADVDS LLGRGLNDDQ CFGMEGLGLR  240
DCKEKESKGR VKLEEDDDQD GIDGVDFMGC QLGESENDMM REPFVLNFED YDDSPASCGE  300
QDDKMIVGID SNCTEDHEHE EADEDATDNR KKRKTILRLD YEAVITAWDG SPWTSGDRPD  360
FDSEFLPDYM GVCGPGLHYP YGDLNGIGVH PAMVDGGREA RVSRYREKRR TRLFSKKIRY  420
EVRKLNAEKR PRMKGRFVKR SSFAGSAFPV LAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408424RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.52811e-162bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339676.20.0zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A220D3X70.0A0A220D3X7_MALDO; Zinc finger protein CONSTANS-LIKE 6
STRINGXP_008352923.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.11e-86B-box type zinc finger protein with CCT domain