PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000185981
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 227aa    MW: 25537.2 Da    PI: 4.7277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000185981genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18631481199
                    HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    +++  l++p+kf++++  +++++    l+l+ +s  sW+v++  +k++++ + + +GW+eF k+n L  gDf+vF++dg+++f   + +f++
  MDP0000185981  63 FNTEKLTVPRKFLTHIlkELSER--ASLKLKGSSDYSWTVNV--TKTPKGaVRFNGGWQEFLKDNSLGHGDFLVFTYDGKMQF--SIDIFDN 148
                    56778********8888766644..57***************..888777799*************************99999..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-2348151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2150151IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.32453149IPR003340B3 DNA binding domain
CDDcd100176.91E-1753147No hitNo description
SMARTSM010191.6E-1155149IPR003340B3 DNA binding domain
PfamPF023629.9E-1663148IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSRKIERSSD SHSYVSQAYV CILSCSMSFP LQSIAIGSTT EKMARMPKEE KKPTFFQIIC  60
KGFNTEKLTV PRKFLTHILK ELSERASLKL KGSSDYSWTV NVTKTPKGAV RFNGGWQEFL  120
KDNSLGHGDF LVFTYDGKMQ FSIDIFDNTA CHRIDDKINP NSNSSSGDAS VQNLSSSESS  180
EFDESIEEEE DDSCKDSEAT CEDNISEDSE ATRTESFKSN FPHYNDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008362156.11e-135B3 domain-containing protein REM20-like
RefseqXP_008362164.11e-135B3 domain-containing protein REM20-like
TrEMBLA0A498JV411e-134A0A498JV41_MALDO; Uncharacterized protein
STRINGXP_008362156.11e-135(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.18e-14B3 family protein