PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000186131
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 255aa    MW: 27949.3 Da    PI: 7.6657
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000186131genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.4e-20115165256
            AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                    +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae Aa+a+++a+++++g+
  MDP0000186131 115 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFETAEAAAQAYDQAALRFRGN 165
                    7********.**********66.....56*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-35115178IPR001471AP2/ERF domain
PROSITE profilePS5103225.396115172IPR001471AP2/ERF domain
PfamPF008471.4E-13115164IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-22115173IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-32115173IPR001471AP2/ERF domain
PRINTSPR003671.4E-11116127IPR001471AP2/ERF domain
CDDcd000189.71E-16123174No hitNo description
PRINTSPR003671.4E-11138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSAMVSALTH VVAGDENEVA AAGVNSDSRT SSWGSVGTKR RREEEEEGGG GGGPLSESVT  60
RLCRAFDEFP KHILGPSSAF GEGLXTRTTT TAIPPTPSXX YVYSAPEIAE PIRRRYRGVR  120
QRPWGKWAAE IRDPFKAARV WLGTFETAEA AAQAYDQAAL RFRGNKAKLN FPENVRLLSS  180
TAVPPPTQLS NSAPQNTLLS VATSSEPIVH SQAFHSSDEV PSTSRNLVSY SELVDMQRQP  240
MSIYYQMQWR SQNSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23114175466ATERF1
3gcc_A1e-23114175466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950710.11e-177ethylene-responsive transcription factor ABR1-like
TrEMBLA0A498I0G11e-139A0A498I0G1_MALDO; Uncharacterized protein
STRINGXP_008362283.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-30ethylene response factor 110