PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000186703
Common NameAFL2
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LFY
Protein Properties Length: 423aa    MW: 46933.4 Da    PI: 7.3269
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000186703genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY613.44.3e-18714091386
        FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklr........eleelfkayGvryltvakiaelGftvstLvdmkdeeldd 88 
                    mdp+afsa+lfkw  r ++  p++r++ eaav++a+ +aaaaaa ++lr        +le+lf+ayGvry+t+akiaelGftv+tL+dm+d+eldd
  MDP0000186703   1 MDPDAFSANLFKWGLRGMV-VPTNRVQLEAAVPPAA-AAAAAAAGCTLRppgelglgGLEDLFQAYGVRYYTAAKIAELGFTVKTLLDMTDDELDD 94 
                    9*************99776.6788999999887776.66666777778889999999*************************************** PP

        FLO_LFY  89 lmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet.aldalsqeglseepvqeekeaagsggeglgeaelvaaeekksee 183
                    +m+sls+ifr++llvGeryGikaavraerr+l+ee+  ++rr+++s d++t aldalsqeglseepvq+eke++gsgg+   ++e+++a e+++++
  MDP0000186703  95 MMSSLSQIFRWELLVGERYGIKAAVRAERRHLDEED--SRRRNHVSGDTTTnALDALSQEGLSEEPVQQEKEMVGSGGGA--AWEVATAGERRKKQ 186
                    **********************************88..55555677776655************************9999..77777777644444 PP

        FLO_LFY 184 ekkkaskk...kqk.rkkkkelkseededeeeeededeegsgedge...erqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiake 272
                    +++k+ +     +  r+++++++  +ded+++ +d  ++g+g +g    erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iake
  MDP0000186703 187 RRMKKGQFrncSAGgRHNNDNNEGVDDEDDNDMDDMTGHGNGGGGGmlgERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKE 282
                    4444333301222202222222333566666666666666555554577*********************************************** PP

        FLO_LFY 273 rGekcPtk.............vtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdi 355
                    rGekcPtk             vtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasna rrafkergenvGawrqacykplvaiaa qgwdi
  MDP0000186703 283 RGEKCPTKvfvkttwiknvfrVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNAXRRAFKERGENVGAWRQACYKPLVAIAAGQGWDI 378
                    *******9444444444444459************************************************************************* PP

        FLO_LFY 356 davfnahprLsiWYvPtkLrqLChlerskas 386
                    da+fn+hprLsiWYvPtkLrqLCh+er++a+
  MDP0000186703 379 DAIFNSHPRLSIWYVPTKLRQLCHAERNNAT 409
                    ****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016982.9E-1961408IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MDPDAFSANL FKWGLRGMVV PTNRVQLEAA VPPAAAAAAA AAGCTLRPPG ELGLGGLEDL  60
FQAYGVRYYT AAKIAELGFT VKTLLDMTDD ELDDMMSSLS QIFRWELLVG ERYGIKAAVR  120
AERRHLDEED SRRRNHVSGD TTTNALDALS QEGLSEEPVQ QEKEMVGSGG GAAWEVATAG  180
ERRKKQRRMK KGQFRNCSAG GRHNNDNNEG VDDEDDNDMD DMTGHGNGGG GGMLGERQRE  240
HPFIVTEPGE VARGKKNGLD YLFHLYEQCR DFLIQVQNIA KERGEKCPTK VFVKTTWIKN  300
VFRVTNQVFR YAKKAGASYI NKPKMRHYVH CYALHCLDEE ASNAXRRAFK ERGENVGAWR  360
QACYKPLVAI AAGQGWDIDA IFNSHPRLSI WYVPTKLRQL CHAERNNATA SSSASGGGDH  420
LPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1052364184173PROTEIN LEAFY
2vy2_A1e-1052364184173PROTEIN LEAFY
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In developing inflorescences, leaf primordia and very young leaves.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0561590.0AB056159.1 Malus x domestica AFL2 mRNA, complete cds.
GenBankAB1620340.0AB162034.1 Malus x domestica AFL2 mRNA for LEAFY protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280945.10.0floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLQ8W3Y70.0Q8W3Y7_MALDO; AFL2 protein
STRINGXP_008392692.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-102floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Wada M,Cao QF,Kotoda N,Soejima J,Masuda T
    Apple has two orthologues of FLORICAULA/LEAFY involved in flowering.
    Plant Mol. Biol., 2002. 49(6): p. 567-77
    [PMID:12081365]
  2. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]