PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000189406
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 540aa    MW: 59808.9 Da    PI: 9.104
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000189406genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++W   E+e l+ +v+++G+g Wk I +         +R+  ++k++w+++
    MDP0000189406  5 KQKWXXAEEEALLAGVAKHGPGKWKNIIKDPEcapflIHRSNIDLKDKWRNL 56
                     799************************99998988*999***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.034161IPR017930Myb domain
SuperFamilySSF466893.43E-13258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-12456IPR009057Homeodomain-like
SMARTSM007171.4E-5459IPR001005SANT/Myb domain
PfamPF002491.2E-5556IPR001005SANT/Myb domain
CDDcd116601.53E-121956No hitNo description
SuperFamilySSF467855.99E-12114189IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.6E-11114181IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.8E-10115187IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.314116186IPR005818Linker histone H1/H5, domain H15
PfamPF005385.8E-9118181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGNQKQKWXX AEEEALLAGV AKHGPGKWKN IIKDPECAPF LIHRSNIDLK DKWRNLGVNS  60
CGHGSKERPR ATKIRKVVGT QHDIVQSPAS AASVRPNASL VAVTNDALST ASDGKNAPRY  120
DAMIFEALLT MKDKDGSTIG AILNYIEQRH EVPVPANFRR VLGTRLRQLA MQGKLDKAQN  180
GYKIKKDVTL VAETPISTPD QKEVRPWKLQ NYVPMISTET VKDAADNAAY KLVDADNKCF  240
LATQAMKEAE RVSMMAEDTD SMLLLMEEIY EQCKYETCMC TLVVVCVVKS LPWLRSSING  300
VCKFTDPIEQ FKLSFVMKMH SNSVIPEVNS IWMRDDTSTG DKILSNDTTV SGLVVATLGL  360
VAPISWPRHE CQHIEIGIIT YTINILVTVI FFCVHQMLNI RDMSICTGVQ EPLSIVLPVE  420
SDRAGCPSFP HIWQPRWLAA PAPRVDGNTP RLLPRDRPPR PLVVTKALAG AASTRGAVCS  480
VILLSVVSRR ASRVGYVIGV SVYHVPEQRS VISYVGYVIG VSMDPSTYPI KSRLLRIGRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.266960.0fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392379.20.0telomere repeat-binding factor 4
TrEMBLA0A498J0K90.0A0A498J0K9_MALDO; Uncharacterized protein
STRINGXP_008392379.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-60MYB_related family protein