PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000189426
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 385aa    MW: 43217 Da    PI: 6.2454
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000189426genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.3e-16991791396
                    TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    +  l +p++f+++++++  e   ltl+d+   sW+vk+  r + g++ +t+GW eF ++n L  g fvvF +dgr++f   ++v
  MDP0000189426  99 TEYLHIPRDFLKHIQKDLSERAFLTLTDSLDCSWSVKV-SRTTMGAVRFTDGWHEFLRDNSLGHGNFVVFIYDGRMKF--SIRV 179
                    34599******888666667778***************.3666666****************************9999..5555 PP
2B352.58.6e-173003821299
                    HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    +s+++++p  f ++h +k ++++++ +++ + ++W v++ + ++s  + +++GW++F+++n++  gD+++F+l +  + e++v++++k
  MDP0000189426 300 TSSNVYVPAAFSRKHFSK-QKHFKIFMKNAEEKTWAVNVVHLNTS--HSFSAGWSRFASSNQIGIGDTCIFELLS--SNEMKVRIIQK 382
                    456799*********654.5889****************777777..669**********************875..66679998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-2282185IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-2083185IPR015300DNA-binding pseudobarrel domain
CDDcd100172.14E-1587180No hitNo description
PROSITE profilePS5086312.60587183IPR003340B3 DNA binding domain
SMARTSM010192.4E-989183IPR003340B3 DNA binding domain
PfamPF023621.5E-1298179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-19286382IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-18287381IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.506289383IPR003340B3 DNA binding domain
CDDcd100171.10E-12292380No hitNo description
SMARTSM010191.8E-13294383IPR003340B3 DNA binding domain
PfamPF023621.6E-14300382IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MVVDLGEDVW GGFGKRRYKF ELGMKFQVGE WVWGNELGMG LGSRIGRERG GHYLLGHIRS  60
ISGPAWVLQL SSGKMVKNKS TNDEKKPSFF RILVAGYNTE YLHIPRDFLK HIQKDLSERA  120
FLTLTDSLDC SWSVKVSRTT MGAVRFTDGW HEFLRDNSLG HGNFVVFIYD GRMKFSIRVF  180
GMNACEREVG STKIGSTNQN STFADTTKMP SGGGGQRKCD GSSSKRPHPS SSCSNDDSGE  240
NLCEPEEDDE DSTSNDWDDD EDNTSDEESE DDTSEEDMEA AAESESFKSK FPHFKSVIRT  300
SSNVYVPAAF SRKHFSKQKH FKIFMKNAEE KTWAVNVVHL NTSHSFSAGW SRFASSNQIG  360
IGDTCIFELL SSNEMKVRII QKASV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345496.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A498J0K30.0A0A498J0K3_MALDO; Uncharacterized protein
STRINGXP_008339232.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-14B3 family protein