PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000191500

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LSD

Protein Properties

Length: 230aa MW: 24823.2 Da PI: 9.101

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000191500	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	50.5	3.3e-16	135	159	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C++V MDP0000191500 135 CGNCRTTLMYPFGAPSVKCAVCHFV 159 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.6E-12	132	160	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.2E-14	135	159	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MYYLVLKVKK NLLRLCRASL CVVGVGAFFY ILEELQMYAV HYAIQSPQSL LLDVANAYAW 60 GNKCEVLLLS HSKSCSSAIR KDLKNLTEPA YVVIAYVQLI LCLITVSLPQ LLIDFSPVGL 120 IFVKKASSQV AHINCGNCRT TLMYPFGAPS VKCAVCHFVT NAGMANMRVP IPAHRPNGTA 180 NSGMVPSTSA AMPHSQSQTV VVENPMSVDE SGKLVSNVVV GVTRGKTSTA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.14125	1e-112	leaf\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_008351620.1	1e-108	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4027	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	4e-38	LSD family protein

Link Out ? help Back to Top
Phytozome	MDP0000191500