PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000192438
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 315aa    MW: 36183.9 Da    PI: 6.5074
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000192438genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.5e-16221141100
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffk+ + +d++k + + +p kf+ ++g     s  ++l+ +sg +We++l  r+++g+++l+kGW +F +   L+    +vF ++g+s+f  +v++
  MDP0000192438  22 FFKIIV-NDTSKYNKIKIPTKFVMKYGDG--LSNSVVLQVPSGSEWEMEL--RRYDGEVWLEKGWPDFSHFYSLDFAHWLVFGYEGNSKF--LVRI 110
                    667664.57777888***********755..7778***************..**********************************9999..**** PP

                    E-SS CS
             B3  97 frks 100
                    f++s
  MDP0000192438 111 FDRS 114
                    *985 PP
2B360.62.6e-19219304188
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                    f+kv +++ +l+ + l+l  kf+++h + k+++  + l+ ++gr+W+vkl  +   gr+ l +GWk+Fv++n L  gD++vF l+++ +
  MDP0000192438 219 FLKVAMQPTYLQYCYLSLRSKFVKKHLS-KTCD-HVFLRRSDGRTWRVKLE-QYETGRCRLLSGWKKFVQENSLAIGDVCVFVLIDNiK 304
                    899***********************54.4565.9***************3.33334477889********************998644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.45E-2215115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-2215115IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-1720112No hitNo description
PROSITE profilePS5086312.54821114IPR003340B3 DNA binding domain
SMARTSM010196.2E-1222114IPR003340B3 DNA binding domain
PfamPF023629.3E-1322113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-22211308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-20213312IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.775219315IPR003340B3 DNA binding domain
SMARTSM010193.5E-14219315IPR003340B3 DNA binding domain
CDDcd100171.08E-15219313No hitNo description
PfamPF023624.8E-17219304IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MACLTQETDD CPTTYSPTTP HFFKIIVNDT SKYNKIKIPT KFVMKYGDGL SNSVVLQVPS  60
GSEWEMELRR YDGEVWLEKG WPDFSHFYSL DFAHWLVFGY EGNSKFLVRI FDRSCTEIEY  120
PLQTPEEXET DEDSISNXSD HDSSDDARDD YEAHSGDDSV QILEEXSPCQ RETKGKSPLP  180
CPRPHKKXIT SSSGKAGPSA RAKAKALQMV SSFTSEYPFL KVAMQPTYLQ YCYLSLRSKF  240
VKKHLSKTCD HVFLRRSDGR TWRVKLEQYE TGRCRLLSGW KKFVQENSLA IGDVCVFVLI  300
DNIKPLFNVI FFPTT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.6720.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384832.20.0B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A498HXF00.0A0A498HXF0_MALDO; Uncharacterized protein
STRINGXP_008384832.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-36B3 family protein