PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000192797
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 342aa    MW: 39938.1 Da    PI: 8.5329
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000192797genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.4e-081031321545
                      HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  15 avkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ ++G g+W+ +++++g ++t+ qc++++ 
    MDP0000192797 103 GIXMYGFGNWTEVSEHVG-TKTRQQCIDHYK 132
                      5789**************.**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002912.9E-105094IPR000433Zinc finger, ZZ-type
PfamPF005696.1E-85486IPR000433Zinc finger, ZZ-type
CDDcd023359.28E-2454102No hitNo description
SuperFamilySSF578501.0E-1254106No hitNo description
PROSITE patternPS0135705683IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.7345697IPR000433Zinc finger, ZZ-type
PROSITE profilePS512939.97898139IPR017884SANT domain
CDDcd001675.51E-6103132No hitNo description
SuperFamilySSF466893.04E-7103138IPR009057Homeodomain-like
PfamPF002494.4E-7104132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-4104133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRSRAVSQA AVDNHNQIRG KRKRTASGAE VAENSSTAQK PVAQEISEPK GAFYLCNYCN  60
KDXSGKIRIK CVVCPDFDLC IECFSVXAEL TPHKCNHPYR VMGIXMYGFG NWTEVSEHVG  120
TKTRQQCIDH YKAIYMNSPY FPLPDMSHVM GKSREELLAL XKGSDEIKKD VKNQRRIQLP  180
NHRPTQLLQK LRLTEALEKK KLRSLVEEGP SMTELXXYNF KRQEFEIEYD NDAEQILADM  240
EFKDTDTNAD LIANARQQMS QKFSYNLDER KRRKNFVLER NLLYPDPFEK GLAPEEREVY  300
KRFKVFMRFH SSEEHKELLK NIIEEQHIVK RILNLQWVAL VE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C2e-18561477120Transcriptional adapter 2
6cw3_E2e-18561477120Transcriptional adapter 2
6cw3_G2e-18561477120Transcriptional adapter 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365226.20.0LOW QUALITY PROTEIN: transcriptional adapter ADA2a-like
SwissprotQ75LL61e-107TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLM5WRZ20.0M5WRZ2_PRUPE; Transcriptional adapter
STRINGXP_008365226.10.0(Malus domestica)
STRINGEMJ164490.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15371726
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]