PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000193097
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 576aa    MW: 63610.3 Da    PI: 6.0295
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000193097genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.4e-17151195147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
    MDP0000193097 151 RERWTEEEHKKFLEALKLYGRA-WRKIEKHVG-TKTAVQIRSHAQKF 195
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-16145200IPR009057Homeodomain-like
PROSITE profilePS5129421.095146200IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-9148196IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-16149198IPR006447Myb domain, plants
SMARTSM007179.4E-14150198IPR001005SANT/Myb domain
PfamPF002493.1E-14151194IPR001005SANT/Myb domain
CDDcd001675.53E-11153196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MIWKFSFSKL SKVNDDLETF GDRSELADGE RDVXKSTPIL EDRRAESKYG GVEIGTVIRK  60
WAGXRTEPCG EDRDKXLLWF LQAEGVRRNG VVTGRAEEEE QFGSTGSXGV VSAGNGISPS  120
AGGVQLKDDQ FSTGNDFTPK VRKPYTITKE RERWTEEEHK KFLEALKLYG RAWRKIEKHV  180
GTKTAVQIRS HAQKFFSKVA RYPNGGNATS EEPIDIPPPR PKKKPMRPYP RKLVHPLDKE  240
TSIVEQPTRS ASPNLSVSEQ ENQSPTSVLS VIGSDAMGST DSNTPSDGLS PDSSAAGVNS  300
ENLIHSEPNP LLEESGSPIX NCSLPNKQLT MKLELFPTDD VDASGGSAKE AFARSLKLFG  360
RTVLVTDSHR PSSRAAGTSQ SLPSDVQEEK PVQTSLPVNF TDMESASGNV EHVWDNFPYG  420
GHQGIYFMQF QNQNSDAVES GTNAYPXPWW TXCPPFIPFH KQQQQPVNEH VDSKKVDRED  480
SCTGSDAGSA SDEENRDKND ETQGDHYQQX SDKDREPNSV LQFKASANSA FSKIRASTGK  540
YRKGFVPYKR CTAERDAKSS TVASEDGDGK RICLSL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.126500.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8267313e-35AY826731.1 Pisum sativum Myb2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367121.10.0PREDICTED: protein REVEILLE 1-like isoform X1
TrEMBLA0A498J5A40.0A0A498J5A4_MALDO; Uncharacterized protein
STRINGXP_008381387.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-66MYB_related family protein