PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000193129
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 741aa    MW: 83828.7 Da    PI: 7.3976
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000193129genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.38.3e-23377420245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
         SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                    + e++ nrqvtfskRrngilKKA+ELS+LCd+++ +++fs+tg+
  MDP0000193129 377 KLESSGNRQVTFSKRRNGILKKAKELSILCDVDIVLLMFSPTGR 420
                    67999*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.1550.107.3E-42157322No hitNo description
SuperFamilySSF556816.63E-31157321No hitNo description
SMARTSM004328.8E-31368427IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.848368428IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-26369462IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-18370390IPR002100Transcription factor, MADS-box
PfamPF003197.3E-21379422IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-18390405IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-18405426IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MGHHPFCCRG LTIGSTVFGP NFLHSRNEPL STFSTITVPV TLSLSPRRRG QLAGVVAPVF  60
DPIKDGFNDY SSRKKLWASI HEPCQIKGNS HSPTASFRGA TASDLFVGSF LDYHYRASSK  120
HVDDVVVICP RYECHAWSIV DIFSKLHDSG CAHSLRKPAE LLEIDLVLRD QIPVIRRFTG  180
GGTVTVDQNT LFVTFICNKD AVPGLQPYPR PIMSWSSLVY SKVFEGLADF QLRENDYVFG  240
NRKFGGNAQS ISKNRWIHHT SFLWDYEVRN MAYLKHPKRV PEYRLARDHL EFICHMKDYI  300
PRSVFLEKTV EAIGTHFSVR PEQSDTIEAT SNTKFVPSTR LLTRQELEEA AAFESQAERN  360
LTQSLSLMGR VKLKIKKLES SGNRQVTFSK RRNGILKKAK ELSILCDVDI VLLMFSPTGR  420
PTLFQGERSN IEEIISKFAQ LTPQERAKRK LESLEVLKKT FKKLDHDVNV QDFMSSSSQT  480
VQDLTHQVMV LQAQLTELHR RLSLWSDPDK VDNLEQLRQM EDMLKESINR TRLHKENLGK  540
HQLTSLDCTN QFQNGMPSSF LVGGSQEAQP ITWLFNSDNQ HMILPNEQNY LPHRGVECST  600
NTTVPHYIRY FGTGTSTSSS TGKQSEAGDP LQLDTMGQIS NMEGGGGFNE FDINACLSTE  660
SGEHYAYPTY CSSNVPDDKK VKPENEMNVP ANPVDYQLSS NFELPRSLYE NDHHAWLSSP  720
GPSGIAVYKE NTYQPATWGI D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-15368459190Myocyte-specific enhancer factor 2B
1tqe_Q2e-15368459190Myocyte-specific enhancer factor 2B
1tqe_R2e-15368459190Myocyte-specific enhancer factor 2B
1tqe_S2e-15368459190Myocyte-specific enhancer factor 2B
6c9l_A2e-15368459190Myocyte-specific enhancer factor 2B
6c9l_B2e-15368459190Myocyte-specific enhancer factor 2B
6c9l_C2e-15368459190Myocyte-specific enhancer factor 2B
6c9l_D2e-15368459190Myocyte-specific enhancer factor 2B
6c9l_E2e-15368459190Myocyte-specific enhancer factor 2B
6c9l_F2e-15368459190Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.9930.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374555.10.0agamous-like MADS-box protein AGL65 isoform X1
TrEMBLA0A498JNB80.0A0A498JNB8_MALDO; Uncharacterized protein
STRINGXP_008374555.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.16e-96AGAMOUS-like 65