PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000193830

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 181aa MW: 19807.7 Da PI: 8.1308

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000193830	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	39.5	1.6e-12	20	86	1	61
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere.damssl 61 +C+ C+vlr++C++ C+l+ ++ p++q + + +++k+F+ + +l+++ +pe++r+ a++s+ MDP0000193830 20 SCNXCRVLRKGCSDTCILRSCLywidsPEAQGNXTLFLAKFFSHNDLLSFVXVVPENQRPvSAVRSV 86 6*********************************************************851566665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.7E-9	20	85	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MQQDMHTEVV PVLDRMVEMS CNXCRVLRKG CSDTCILRSC LYWIDSPEAQ GNXTLFLAKF 60 FSHNDLLSFV XVVPENQRPV SAVRSVRPHG EPGERSGGAS VEWELARVPV GGRYGARSMH 120 AEKSLXSVGV GILRRGANXA VRGGGALSEX ESRGGXERKR EGNVDLRKCL DGSATEGYNV 180 V

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.23857	6e-77	root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A498KND7	1e-104	A0A498KND7_MALDO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-24	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	MDP0000193830