PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000195608

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 236aa MW: 27528.5 Da PI: 9.7117

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000195608	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.9	4.7e-05	82	127	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er RR++ ++++ L ++l ++++K i++++ I++L MDP0000195608 82 RHMINERMRREKQKQSYLALHSMLSAG-----TRNDKNLIVQMTAMNIQQL 127 5889*****************9876.....89********9999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.52E-8	75	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.055	78	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDRYILKALE GEFLWYDESX PVLLNQSAFV PYTNRPISNQ LPNGVXKSMN VNKRMLQFLR 60 KSWQPAAARN EAGEDGRERG XRHMINERMR REKQKQSYLA LHSMLSAGTR NDKNLIVQMT 120 AMNIQQLKRY EEELRKKNME LETLLVENEK ERVKWTKIRL KVANPTSGID STLEVLKCLQ 180 HLGLKARNIR SNFSLEEFSA ELEIESKXGA AEIEESVQET LYEAERKLHF PFPAGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009346437.1	1e-148	PREDICTED: transcription factor bHLH92-like
TrEMBL	A0A498I7U9	1e-154	A0A498I7U9_MALDO; Uncharacterized protein
STRING	XP_008391054.1	1e-170	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12572	27	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	3e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000195608