PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000196222
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 218aa    MW: 24828.9 Da    PI: 7.8743
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000196222genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.1e-0821442246
                     T-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                      +W++Ia +++ gRt++++k++w +
    MDP0000196222 21 TRWSLIAGRLP-GRTANDVKNYWST 44
                     36*********.***********65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.5E-71853IPR009057Homeodomain-like
PfamPF002495.0E-62144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-102154IPR009057Homeodomain-like
CDDcd001671.13E-42242No hitNo description
PROSITE profilePS500906.0512246IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MRDSIPNITE IFCKNIAPSN TRWSLIAGRL PGRTANDVKN YWSTRLRKKL ASGDREKDHK  60
PLQQIQVEAT KTVIIRPRPR TFSKNLNCLG RKLATTNLQQ HNYQVLLQEP SPMPSSSTPT  120
EIYGNTETSL SDNNKDRSSV ERALLCYGLQ LEKEHDLFTN FWDEEYDVMA DTTTTTTTAT  180
TIGINCSSTQ QEGGLMSRNH YFSSFDDMDI WNNLKACI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240567.17e-30PREDICTED: transcription factor MYB90-like
RefseqXP_008245868.17e-30PREDICTED: transcription factor MYB90-like
TrEMBLA0A498I1H11e-132A0A498I1H1_MALDO; Uncharacterized protein
STRINGXP_008344207.12e-88(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56650.13e-15production of anthocyanin pigment 1