PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000197219
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 457aa    MW: 49185.7 Da    PI: 8.5433
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000197219genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.71.9e-21315377163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    ++e+krerrkq+NRe+ArrsR+RK+a +eeL++kv++L+a N aLk+e+++l++++ +l+ e+
  MDP0000197219 315 DREIKRERRKQSNRESARRSRLRKQAXTEELARKVEALSADNVALKSEINRLTENSXTLRLEN 377
                    689*****************************************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.0E-31199IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.0E-17132198No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-15312374No hitNo description
SMARTSM003381.9E-20315379IPR004827Basic-leucine zipper domain
PfamPF001701.7E-19316377IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.875317380IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-11318374No hitNo description
CDDcd147028.37E-21320368No hitNo description
PROSITE patternPS000360322337IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGNDDDAKSV KSEKSYSPLP ADQANPNNQT NLHVYPDWAA MQAYYGPRVA LPPYYNSAMA  60
SGHPPHPYMW PPPQHMMPPY GAPYAVYSHG GVYAHPAVPL ASHGQGGPSL PAAVTPLNME  120
TPTKSSGNTD CGLMKKLKGF DGLAMSIGSG NVMNAXGGAE XSLSQSSGTE GSSNGSDGNT  180
AAANQTRRKR SREGTPATVH KILSSIQPXF DTYLCSIFVP XAGEGKTDMQ PGPAEEASAA  240
TDKVLGVTLA AVSIPGKLVG PAVSPGMTTA LKLKNSPILN SKTSPTSVPQ SCAVLPPETW  300
IHVCLWWLEY DSQNDREIKR ERRKQSNRES ARRSRLRKQA XTEELARKVE ALSADNVALK  360
SEINRLTENS XTLRLENTTL LDKLKNARVG RMEDIIMNID DKRVQPFSTE NLLSRVNNAG  420
SIARDAEKDG DTYEKNNGTK LHQLLDASPR ADAVVAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331337RRSRLRK
2331338RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008343422.20.0common plant regulatory factor 1-like isoform X1
SwissprotQ990891e-138CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A498KJZ80.0A0A498KJZ8_MALDO; Uncharacterized protein
STRINGXP_008343422.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-99G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]