PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000197417

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 230aa MW: 25367.6 Da PI: 4.628

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000197417	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.4	1.2e-11	14	45	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+eEd++lv++++q+G g+W++ ++ MDP0000197417 14 KGPWTPEEDQKLVQYIEQHGHGSWRALPKLAD 45 79***********************9998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-13	5	43	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.059	9	67	IPR017930	Myb domain
SuperFamily	SSF46689	3.16E-9	11	44	IPR009057	Homeodomain-like
SMART	SM00717	0.0056	13	61	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-9	14	43	IPR001005	SANT/Myb domain
CDD	cd00167	5.21E-7	16	42	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MGRSPCCDES GLKKGPWTPE EDQKLVQYIE QHGHGSWRAL PKLADQAVQL TKLQYIEHLL 60 QSVAYTSNND TYTQNRSTEM EMDDQAFNLL SSINIPPSKE TPNFNSLQLE NPSSFSHGYG 120 GNSSQPLHHL QSLLPHDLAD PQVAFSSLPS LNNSNHEVGQ GSNFTVVRGQ EKNPSDESSW 180 FNNLVSPTAS IPPTSNVPGD AYCSRSSYGG RSSDSSSYWP DLFLEDANYG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008368426.1	1e-122	transcription factor MYB93-like
TrEMBL	A0A498HXS8	1e-118	A0A498HXS8_MALDO; Uncharacterized protein
STRING	XP_008379772.1	1e-170	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF402	34	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	4e-25	myb domain protein 93

Link Out ? help Back to Top
Phytozome	MDP0000197417